Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0106
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 34 0.13
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 32 0.39
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 31 0.68
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.6
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.6
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 29 3.6
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 29 4.8
12_02_0877 - 23946449-23948284 28 8.4
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 8.4
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 28 8.4
05_04_0196 - 18964927-18965218,18965337-18965503,18966182-189663... 28 8.4
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 8.4
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 8.4
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 545 RSRTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
+SR R RHD E+PR+ +R PKR+
Sbjct: 289 KSRKDRRRHDSEDEEPRRKHQRSEDDEPKRR 319
>05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 587 VLS*PLNGGRTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKR 456
VLS PL T+S TK N+ D +E R A +GSG+ R
Sbjct: 1016 VLSAPLPSSGTKSTEGGTKWNKCDREREHSRDASAKGSGTKSGR 1059
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 263 QFATSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 117
QF + + +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 21 QFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 354 TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICHFPYLHYSI 229
T+P + H L + RH P L+A P S + C P + +I
Sbjct: 100 TKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPLISSAI 141
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 333 HPLPVQTRHAPVLRANP 283
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -1
Query: 624 F*LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRLTAGRSAEG 490
F L SR +V+A + T E +SY+ +P+ ++ +RL + + A+G
Sbjct: 2302 FSLFSREQVVKAMMKTTKEVQSYKFIPLVYQI-ASRLGSSKDAQG 2345
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 374 NITHEHRPDPAPVRIRFPSKPDTPRSSEPILIPKLRIQFATSLTYIILSTRGSS 213
++ H H P+P R P P +S PI P + + A +T I L T S+
Sbjct: 108 SVRHYHYYPPSPTRSSSPPTPAAHTTSCPI-CPYVLLAAAVGITIIFLCTLASN 160
>12_02_0877 - 23946449-23948284
Length = 611
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 337 SASASRPNPTRPGPQSQSLFRSYGSNLPLPLP 242
SASA RP PT P + L + ++LP LP
Sbjct: 10 SASAVRPPPTWGAPSQRRLVEQHLASLPRGLP 41
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 555 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 683
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 388 NSLKRT*RTNIDQTRHRSASASRPNPTRPGPQSQS-LFRSYGSNLPLPLPTL 236
+SLKR TN+ QT R+ + RPG ++QS S+ + PL T+
Sbjct: 310 SSLKRV--TNVKQTPRRTIPSMNHGGDRPGKENQSCTTNSFRDHSRFPLKTV 359
>05_04_0196 -
18964927-18965218,18965337-18965503,18966182-18966328,
18966419-18966650,18968087-18968241
Length = 330
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 524 RHDLRQEDPRKAGERGSGSSPKRKTIFASVILNIYSF*GRIILKY*LAKTNI 369
+ L Q RK E G GSSP + F++ +L S IL Y L + +
Sbjct: 186 KQKLIQRQRRKNAEAGGGSSPVALSAFSAFLLGAISKSVATILTYPLIRCKV 237
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 555 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 683
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 195 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 64
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,218,498
Number of Sequences: 37544
Number of extensions: 536912
Number of successful extensions: 2033
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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