Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0106
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14920.1 68417.m02292 PHD finger transcription factor, putative 30 1.7
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)... 29 2.3
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 4.0
At4g37440.1 68417.m05299 expressed protein 29 4.0
At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 4.0
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.3
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.3
At1g07220.1 68414.m00768 expressed protein 28 5.3
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 28 7.0
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 28 7.0
At5g22390.1 68418.m02612 expressed protein 27 9.3
At4g10790.1 68417.m01759 UBX domain-containing protein low simil... 27 9.3
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 27 9.3
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 9.3
>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
Length = 1055
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 243 GKGSGK--LDP*LRNKDWL*GPGRVGFGREADADRCRVWSMFVRYVRFSE 386
G GS + LD R K +L G G +GFG + +RC+ + R + F E
Sbjct: 162 GTGSSRKGLDIEKRRKPYLDGSGNIGFGNQGYRNRCK--KKYKRDMNFDE 209
>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 338
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 412 EAALY*NTNSLKRT*RTNIDQTRHRSASASRPNPTRP 302
E Y NT+ KR ID H+ ++S PNP P
Sbjct: 103 EVKNYWNTHLKKRLIDDGIDPVTHKPLASSNPNPVEP 139
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 355 DQTRHRSASASRPNPTRPGPQSQSLFRSYGSNLPL-PLPTLFYRLEALHLGDLLRIWVRT 179
D+ R AS + PNP+ P+ + ++LPL PL LF+ ++ H L ++V
Sbjct: 60 DELLLRQASKANPNPSPKFPKKLAFMFLTTNSLPLAPLWELFFN-QSSHHKSLYNVYVHV 118
Query: 178 GAT 170
T
Sbjct: 119 DPT 121
>At4g37440.1 68417.m05299 expressed protein
Length = 471
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 563 GRTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRKTIFASVILN 426
G + R RT RNR + +E+ R S PK + AS N
Sbjct: 407 GPSRPVRKRTPRNREIITKEESNPKRRRVSREKPKSNAVMASRFSN 452
>At2g19150.1 68415.m02235 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 339
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 104 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 205
I GG+ + ++ EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 480 RVRIQSET*DDFRECHIKYIQFLRPH 403
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 129 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 31
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 243 LHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPY 76
L Y +D + +T G+ EP H+ P FS + + + ++CS S PY
Sbjct: 37 LFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQCSYFSCPY 91
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 134 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSR 6
P ++G CG +V NH++LL +S+ L+ ++S +R
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNR 84
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 394 NTNSLKRT*RTNIDQTRHRSASASRPNPTRPGPQS 290
NT L+R + + TR +ASA+ N T+P P++
Sbjct: 373 NTVGLRRKQKIPVVDTRTSTASAAAGNGTKPNPEA 407
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 8 ERSGKSFLFCLSVRVPWNPIEG 73
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At4g10790.1 68417.m01759 UBX domain-containing protein low
similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
protein) {Homo sapiens}; contains Pfam profile PF00789:
UBX domain
Length = 480
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 543 IAHETKPTRLTAGRSAEGRRTRVRIQSE 460
I ++ PT +TA AE RRT +R++ E
Sbjct: 297 IVEDSSPTLVTARVEAEERRTNLRLREE 324
>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 865
Score = 27.5 bits (58), Expect = 9.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -2
Query: 494 KAGERGSGSSPKRKTIFASVILNIYSF*---GRIILKY*LAKTNITHEHRPDPAPVRIRF 324
K GE G K+K++ V+ +I S G ++L + L K P P+ ++
Sbjct: 475 KKGEDGH----KKKSVIVPVVASIASIAVLIGALVLFFILRKKKSPKVEGPPPSYMQA-- 528
Query: 323 PSKPDTPRSSEPILIPKLR 267
S +PRSSEP ++ K R
Sbjct: 529 -SDGRSPRSSEPAIVTKNR 546
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 171 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 82
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,012,178
Number of Sequences: 28952
Number of extensions: 393591
Number of successful extensions: 1343
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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