BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf0103 (685 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.3 M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.3 U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 4.1 U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 4.1 AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 4.1 AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 4.1 U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 5.4 >Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein F29D11.1 protein. Length = 4753 Score = 29.5 bits (63), Expect = 2.3 Identities = 13/44 (29%), Positives = 19/44 (43%) Frame = +2 Query: 299 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 430 W+ G C+ + K CDG + C QCS+ + AG Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310 >M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related protein protein. Length = 4753 Score = 29.5 bits (63), Expect = 2.3 Identities = 13/44 (29%), Positives = 19/44 (43%) Frame = +2 Query: 299 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 430 W+ G C+ + K CDG + C QCS+ + AG Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310 >U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked acetylcholinereceptor protein 1, isoform b protein. Length = 713 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17 LT NE+ TS++PG R+ P+K DT Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584 >U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked acetylcholinereceptor protein 1, isoform a protein. Length = 682 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17 LT NE+ TS++PG R+ P+K DT Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553 >AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked acetylcholinereceptor GAR-1a protein. Length = 713 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17 LT NE+ TS++PG R+ P+K DT Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584 >AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked acetylcholinereceptor GAR-1b protein. Length = 682 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 100 LTR*NEHNARTSTRPGTGRIRFPSKPDT 17 LT NE+ TS++PG R+ P+K DT Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553 >U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein C25H3.8 protein. Length = 2148 Score = 28.3 bits (60), Expect = 5.4 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 83 T*RTNIDQTRHRPHPLPVQT 24 T +++ID T H PHP+ VQT Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,411,019 Number of Sequences: 27780 Number of extensions: 307690 Number of successful extensions: 760 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 760 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1560745544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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