Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0101
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.54
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 31 0.71
09_06_0251 - 21859484-21862162 29 1.6
01_06_0456 + 29521282-29522064 29 1.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 2.9
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 28 3.8
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 3.8
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 3.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 3.8
01_05_0535 - 23001864-23005052 28 3.8
12_01_0843 + 7891622-7892524 28 5.0
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 5.0
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 27 6.6
06_03_1448 + 30235336-30236763 27 6.6
06_03_1443 + 30182018-30183445 27 6.6
06_03_1440 + 30166515-30167942 27 6.6
06_03_1437 + 30151030-30152457 27 6.6
06_03_1429 + 30100834-30102261 27 6.6
06_03_1425 + 30084383-30085810 27 6.6
06_03_1420 - 30053713-30055140 27 6.6
05_06_0221 + 26507795-26508937 27 6.6
03_01_0545 - 4086692-4087591 27 8.8
01_01_1195 - 9567023-9567789,9567871-9568120 27 8.8
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 69 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKQTLLSL 215
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 30.7 bits (66), Expect = 0.71
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 397 TTLHAWNDTPCARRYYRPCTAS 332
TT AW +TPCA R++ C S
Sbjct: 560 TTTEAWVETPCAHRFHSRCLES 581
>09_06_0251 - 21859484-21862162
Length = 892
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 342 APLPPNRVSNETMKVVVFQRRSREXISHLSTPLMSPYNARLESSSTGSAFPADSPKPVP 166
APLPP + +F + + H+ P+ + +A + +G A P+ SP+PVP
Sbjct: 114 APLPP--------LLALFDPDTSSDLGHVFLPVSASASASNATDDSGVASPSPSPEPVP 164
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -1
Query: 464 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----HTVRPPILS 348
AW+C P +G+RG +RRR P S R R T+RP + S
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTS 56
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 405 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 494
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -1
Query: 425 KRRRAFPPRHHSAR----LERHTVRPPILSTVHRFRP 327
+ RR +PP SA LER T PPIL +V +FRP
Sbjct: 240 RTRRVYPPCDTSALQMLPLERSTT-PPILISVAQFRP 275
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 361 GRTVCRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 483
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 28.3 bits (60), Expect = 3.8
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = -3
Query: 444 RITREF*TATSVSATSPLCTLGTTHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSREXI 265
RI E AT+ ++T+ T G HR + PLPP T +V R R +
Sbjct: 71 RIEEESPAATTTTSTT--ATTGVMHREGHGTLASRPLPPIHPPT-TPRVRKSSRIVRLEV 127
Query: 264 SHLSTPLMSPYNARLESSSTGSAFPADSPKPVPLAV 157
L ++ + + + ST +A P S K + L +
Sbjct: 128 DRLQK--LTLWRDKKDDPSTAAALPTPSDKNMVLGM 161
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 484 PPQSNSPPGSVLEPDHAGVLNGDE 413
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 261 HLSTPLMSPYNARLESSSTGSAFPADSPKPVP 166
H P + P R SSS+ SA A SP P P
Sbjct: 2 HRKLPPLPPLTLRRSSSSSSSAAAAASPPPPP 33
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = -3
Query: 342 APLPPNRVSNETMKVVVFQRRSREXISHLSTPLMSPYNARLESSSTGSAFPADSPKPVPL 163
AP P V+ +T+ VV + E L SP SSS+G SP P P
Sbjct: 66 APAPAPSVAGKTVPKVVGDCKEMEREKEKEKSLSSP-----SSSSSGMTSVESSPPPPPS 120
Query: 162 AVVSL 148
A++ L
Sbjct: 121 AMLPL 125
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 357 DIIDRAPLPPNRVSNETMKVVVFQRRSREXISHLSTPLMSPYNARLESSS 208
DI+D PLP S K++ +RR+ +S L+ P R++ S
Sbjct: 86 DIVDAPPLPVLSFSPSKDKILFLKRRALPPLSDLAKPEEKLAGVRIDGYS 135
>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 301 SSGFPATIARXDLPLIYTSHVSLQCQ 224
S G P + +LPL+ +H+SL+C+
Sbjct: 855 SLGVPNDVGLGNLPLLNCAHISLECK 880
>06_03_1448 + 30235336-30236763
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 469 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNDTPCARRYYRPCTAS 332
+PP L +L+ GD+R+ V LH W++ R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>05_06_0221 + 26507795-26508937
Length = 380
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 325 VGRKRCTVDNIGGRTVCRSKRAEW*R 402
VGR C +D + R VC S RA + R
Sbjct: 21 VGRNLCEIDRLHARRVCHSWRAAFAR 46
>03_01_0545 - 4086692-4087591
Length = 299
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 408 SATSPLCTLGTTHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSREXISHLSTPLMSPYN 229
+AT+PL + R PA + R LPP + + +R S+P SP
Sbjct: 184 AATAPLMMTSPSPRTPAAAVARWDLPPRGRGVFVLSISPLRREISVSTEAPSSPEPSPQR 243
Query: 228 ARLESSS 208
R ++S
Sbjct: 244 HRHRAAS 250
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 234 YNARLESSSTGSAFPADSPKPVPLAVVSL 148
+ R SSS+ S PA +P P P VV+L
Sbjct: 157 FRRRKPSSSSASPAPAPAPPPPPQPVVAL 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,186,257
Number of Sequences: 37544
Number of extensions: 338796
Number of successful extensions: 1201
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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