Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0100
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 30 1.4
03_04_0006 + 16257288-16259522 30 1.8
05_02_0028 - 5764980-5766374 29 2.4
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.2
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 28 5.5
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.5
01_06_0456 + 29521282-29522064 28 5.5
12_02_0077 - 13288916-13289659,13289689-13289691 28 7.3
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 28 7.3
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 7.3
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 28 7.3
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 28 7.3
10_08_0480 - 18203186-18203284,18203821-18204006,18204590-182047... 27 9.7
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 9.7
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 27 9.7
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 9.7
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = -2
Query: 415 ELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPWPADIID 236
E GH + + D N PGS + +H+ VLN + R A+ + P D ++
Sbjct: 313 ETQAGHWQNGVLDTLSTQNIIPGSPIAVNHSKVLNAVQEARRAAE-RAY-DVPRVDDKVN 370
Query: 235 RAPLPPNRVSNETMKVVVFQRRSR 164
RA N+ +N V + R
Sbjct: 371 RAVASANKAANAARVAAVKAAQKR 394
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 165 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 13
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>05_02_0028 - 5764980-5766374
Length = 464
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 332 GSRGSFKRRRAFPPRHHSA---RLERNTVARRYYR 237
G G + R + PP HHS RL NT+ RR +R
Sbjct: 20 GLSGLYSRASSSPPLHHSGSRRRLRTNTLPRRSWR 54
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 165 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 40
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 294 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 383
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 580 CHKPVIPVVTFLAPLVK 530
C KP+IP T +APLVK
Sbjct: 307 CRKPIIPSGTMVAPLVK 323
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 373 PPQSNSPPGSVLEPDHAGVLNGDE 302
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 353 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER 264
AW+C P +G+RG +RRR P S R R
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR 43
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 108 ESSSTGSSFPADSPKPVPLAVVSLDSR 28
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 349 GSVLEPDHAGVLNGDERFRHVTT-LHAWNETPWPADIIDRAPLPPNRVSNETMKVV 185
GS+ + D L G + H+ LH E PA+IID + +E +K V
Sbjct: 184 GSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPV 239
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 138 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 31
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +1
Query: 247 RRATVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQ 426
R + +R E G +RR L D +RG+ + A H AG + RG
Sbjct: 57 RLRCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGG 111
Query: 427 KPRVEQKGK 453
KPRV+ G+
Sbjct: 112 KPRVDNGGR 120
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 259 PWPADIIDRAPLPPNRV 209
P P ++++APLPP R+
Sbjct: 90 PMPVPVVEKAPLPPKRI 106
>10_08_0480 -
18203186-18203284,18203821-18204006,18204590-18204736,
18204829-18204912,18206290-18206532
Length = 252
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 404 RTPALFFDRCTAPVKLPAWQCPRTGSRGS-FKRRRAF----PPRHHSARLERNTVARRYY 240
++P+ +DR A +LP+ + P + S G+ + RR++ P +S+R R Y
Sbjct: 172 KSPSASYDRYAATTRLPSRELPSSISPGADYMSRRSYLDQVPTDRYSSRAAEQIHGREDY 231
Query: 239 R 237
R
Sbjct: 232 R 232
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 337 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 462
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 519 YKEFLTRG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 626
YK F G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 409 ALGHLRYSLTDVPPQSNSPPGSVLEP 332
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,894,580
Number of Sequences: 37544
Number of extensions: 431183
Number of successful extensions: 1470
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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