BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf0081 (629 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 33 0.045 SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 27 1.7 SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 1.7 SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 5.2 SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 6.8 SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 6.8 SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.0 SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0 >SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizosaccharomyces pombe|chr 3|||Manual Length = 979 Score = 32.7 bits (71), Expect = 0.045 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +3 Query: 207 ASEVVNFDESG*LLQIHGQVPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 377 + E+++F E L G + L C+IN W LRL +L + NQ S E++ Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302 Query: 378 PEKRLP 395 EKR+P Sbjct: 303 QEKRVP 308 >SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 442 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 267 VLDHGSAKVIQIHQN*RLRTRGPPSIGFDLIKALIP 160 ++D G K IH + L + PS GF +I++L+P Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426 >SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 27.5 bits (58), Expect = 1.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +2 Query: 416 RANYPLPAREVVTKNNDT 469 +AN P+P EVVT+NN T Sbjct: 199 KANIPVPTSEVVTENNVT 216 >SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 306 Score = 25.8 bits (54), Expect = 5.2 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -1 Query: 404 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 306 P MW P N+ + YP +PW S+ LPS Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267 >SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 25.4 bits (53), Expect = 6.8 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -3 Query: 402 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 301 L ++ S+ P + PD P T+ V+ TT+E+ Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455 >SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 25.4 bits (53), Expect = 6.8 Identities = 6/14 (42%), Positives = 11/14 (78%) Frame = -2 Query: 451 HYLPCREWVICAPA 410 HY+PC+ W++ P+ Sbjct: 455 HYIPCQSWLVWYPS 468 >SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1158 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 503 YSFRLRGLVRVPYRYFSSLPPVPGVGNL 420 YS RLR ++ Y+Y + P PG+ ++ Sbjct: 271 YSHRLRDSLKEVYQYRRIISPPPGLSSM 298 >SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 338 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +2 Query: 56 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 160 N IY+ +F ++S++ + + I L +RT++SD Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,513,786 Number of Sequences: 5004 Number of extensions: 51054 Number of successful extensions: 105 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 105 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 279695522 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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