Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0076
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0272 - 23738514-23738817,23739382-23740748 33 0.25
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.0
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 31 1.0
08_01_0516 - 4499797-4499949,4500040-4500617,4500699-4500756,450... 29 2.3
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 3.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.1
06_01_0476 - 3388176-3389267 28 7.1
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455 27 9.4
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 27 9.4
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 570 GHLRYS-LTDVPPQSNSPHGSVSNRITREF*TATSVSATSPLCTLGTKH 427
G RY+ +TDVPP N P V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 126 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKRPC*A*L*SGIVRRHER 305
G+ PR + D EW N PT+ ++ + +PRE Q+ K P I+ E
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLK-PA-----IFILNSDES 1446
Query: 306 CSISGR 323
CS+ G+
Sbjct: 1447 CSLKGK 1452
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 150 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTGQKFXL 34
LDDE YL R V + RLL+F++VD STG L
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTGSSVIL 318
>08_01_0516 -
4499797-4499949,4500040-4500617,4500699-4500756,
4500855-4500932,4501032-4501091,4501219-4501332,
4501436-4501594
Length = 399
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -2
Query: 336 SRETISHLCYTSHVSLQCQTRVKLNRVSFPADSPKPVPLAVVSLDSR*GQW---ESR*SI 166
SR ++HL ++ Q +NR S PA P P+ VV+ + QW + R +
Sbjct: 120 SRMKLAHL--EQEITRARQQSAYINRSSNPATLPAPIDSGVVTFEVEYAQWVEEQGRQTA 177
Query: 165 HARH*LDDEAFGYLKRVIVTPAV--YPRL 85
R L A G R +V A+ Y RL
Sbjct: 178 ELRASLQAAAEGPELRAVVEAALAHYDRL 206
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 588 LAELALGHLRYSLTDVPPQSNSPHGSVSNRITREF*TA-TSVSATSPLCTLGTKHRAPAD 412
LA + GH R+ + D + S G + N+ R + +VSA + LC + H AP
Sbjct: 378 LATTSSGHRRFGMEDEIEEELSLAG-IFNKGDRSYAVRRAAVSAYAALCAVLCAHEAPGG 436
Query: 411 IIDR 400
+ DR
Sbjct: 437 LPDR 440
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 454 TTXHAWNETPCARRYY 407
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_0476 - 3388176-3389267
Length = 363
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +1
Query: 91 RVNGGSNYDSLKVAKCLVI*LVTRMNGLTRFPLSLSTI*RNHSQGNGLGRISG--ERDPV 264
R G S+ SL +C + + L L +S + R H GNG R+ G +P
Sbjct: 244 REEGESSSSSLDARRCFS--MGSYQYVLAEASLQVS-VHRRHGDGNGRARLRGLAGANPA 300
Query: 265 ELDSSLAL*GDMRGVA*VGDRFARSSL 345
D++ A G G GD F+ S +
Sbjct: 301 GNDAAAAADGKKIGAGSKGDSFSVSKI 327
>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
Length = 300
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/92 (25%), Positives = 36/92 (39%)
Frame = -2
Query: 597 VSVLAELALGHLRYSLTDVPPQSNSPHGSVSNRITREF*TATSVSATSPLCTLGTKHRAP 418
VS L ++ + + P S +GS+S + S+ T+ T +P
Sbjct: 86 VSRLRDIIIWGYMLRMRGGPLMVTSQYGSISASLLGIIFLIISLRNTNKGLTSLQSSSSP 145
Query: 417 ADIIDRAPLPPNRVSNETMKVVVFQRRSRETI 322
+ D PLPP+R+ K VF E I
Sbjct: 146 TKLGDGLPLPPSRIHRS--KTTVFGNNDSEDI 175
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 472 ERFRHVT--TXHAWNETPCARRYYRPRTASAQ 383
ER RH + T HA E P R RPRT+S +
Sbjct: 474 ERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,049
Number of Sequences: 37544
Number of extensions: 369195
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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