Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0067
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 31 0.55
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046) 31 0.96
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26) 29 3.9
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 6.7
SB_38663| Best HMM Match : ET (HMM E-Value=0.58) 27 8.9
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 397 DVVAVSQAPSPESNPDSPLPVTTM 326
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2
Query: 388 AVSQAPSPESNPDSPLPVTTM 326
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3
Query: 387 PFLRLPLRNRTLIPRYP 337
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 736
Score = 31.5 bits (68), Expect = 0.55
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 449 LKLPCREWVICAPAA-FLGCGSRFSGSLSGIEP*FPVTRDNHGSRRNYHRKLIRQTFERC 273
L+ PCR + C+PA C RF G ++G P+ +G RR +H L+ F C
Sbjct: 127 LEKPCRNFGTCSPAPNDYNCTCRFDGLVTGKNCDVPLIMLYYGQRR-HHGCLV--CFRLC 183
Query: 272 VAGT 261
V+ +
Sbjct: 184 VSSS 187
>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
Length = 396
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 512 PPRATLKESACSPWPRGPGNPLKLPCRE 429
PPR + P RGP NP KL C E
Sbjct: 200 PPRCISSSTPVRPTRRGPRNPAKLTCME 227
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 512 PPRATLKESACSPWPRGPGNPLKLPCRE 429
PPR + P RGP NP KL C E
Sbjct: 200 PPRCISSSTPVRPTRRGPRNPAKLTCME 227
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 536 CDALRCPG-PPRATLKESA------CSPWPRGPGNPLKLPCREWVICAPAAFLGCGSRFS 378
CD L CPG PP + E + C +P+ G ++PC A+ C + +S
Sbjct: 1586 CDKLDCPGSPPCSGQGECSNTNPRRCQCFPKWGGEKCEIPCLNGYNYGNASDCVCDACYS 1645
Query: 377 GS 372
GS
Sbjct: 1646 GS 1647
>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
Length = 317
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 536 CDALRCPGPPRAT---LKESACSPWPRGPGNPLKLPCRE 429
C L CP P + +E S P GPG P K PC+E
Sbjct: 38 CSGL-CPTPTTVSPTPTEEPPPSTTPPGPGEPDKKPCKE 75
>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 403 SLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDQRSAKVIQI 230
S VV + A + P P+ VTT V A T E+ + +A+P+L + +K + +
Sbjct: 120 SSPVVTTAVASAASLKPSKPIVVTTAVAALPTPETSVAVSIPNAAPLLMPQPSKDVHL 177
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 406 PSLDVVAVSQAPSPESNPDSPLP 338
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_38663| Best HMM Match : ET (HMM E-Value=0.58)
Length = 168
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 451 GLPGPLGQGEHADSFSVARGGPGHLRASQTCYCSISCG 564
GLPG + + V G PG +R+++ C C + G
Sbjct: 78 GLPGIVRSARYCTVCQVLYGLPGIVRSARYCICQVLYG 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,223,568
Number of Sequences: 59808
Number of extensions: 422315
Number of successful extensions: 1302
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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