Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0067
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 30 1.5
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 30 1.5
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 29 3.4
AF045643-5|AAC02592.1| 607|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 3.4
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 28 5.9
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 28 5.9
Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical pr... 27 7.9
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 439 GSFSGLPGPLGQGEHADSFSVARGGPGHLRASQTCYCSISCGSKTPV 579
G++ PGP+G G A S + ++ GP + ASQ S S+ P+
Sbjct: 108 GAYQAGPGPIGGG--ASSHAGSQAGPSYAGASQAVGASSYARSQGPI 152
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 439 GSFSGLPGPLGQGEHADSFSVARGGPGHLRASQTCYCSISCGSKTPV 579
G++ PGP+G G A S + ++ GP + ASQ S S+ P+
Sbjct: 108 GAYQAGPGPIGGG--ASSHAGSQAGPSYAGASQAVGASSYARSQGPI 152
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 328 WLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGSFSGLPGPLGQGEHADS 492
W TG + +PE + P ++ +HS+ S SG L GE A S
Sbjct: 141 WGWAATGTEEPTSSAQPEVVVTAPSPTPSSKKSHSKVSSLSGSKTSLASGEKAPS 195
>AF045643-5|AAC02592.1| 607|Caenorhabditis elegans Hypothetical
protein F58H7.1 protein.
Length = 607
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 376 PEKRLPHPRKAAGAQITHSRHGSFSGLPGPLGQGEHA 486
P ++LPH + A Q F GL GP+ Q A
Sbjct: 233 PNRQLPHEQSDANGQAQSHGPFGFHGLQGPISQNVQA 269
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 328 WLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGSFSGLPGPLGQGEHADS 492
W TG + +PE + P ++ +HS+ S SG L GE A S
Sbjct: 141 WGWAATGTEEPTSSAQPEVVVTAPSPTPSSKKSHSKVSSLSGSKTSLASGEKAPS 195
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
C18H2.1 protein.
Length = 1770
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 381 ETATTSKEGSRRANYPLPAREF--QRVARASRPGRTC*FLQCSARRPRTSKGI 533
ET T +E S N PL + ASRP R QC R+ +++K I
Sbjct: 1504 ETRTFLREPSTHRNAPLQTTQVTAHHAGNASRPRRQPKSTQCVPRKRKSAKSI 1556
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 409 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 305
+P+ V+ ++ PS +S + VTT V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 45 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 149
D+ G++ WF +++SV WI +V+ I +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258
>Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical
protein T07D10.2 protein.
Length = 379
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 426 GNLRACCLPWMW*PFLRLPLR 364
GNL +C PW+W F R L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350
>Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical
protein C34C6.3 protein.
Length = 520
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 87 SYSVTWITVVILELIHAIRTLTSDGMS 167
SY+V+WIT + IR + SDG++
Sbjct: 54 SYNVSWITPAASNSTYRIRLIDSDGLT 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,935
Number of Sequences: 27780
Number of extensions: 300408
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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