Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0021
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 577 PALFFDRCTAPVKLPAWQCPRTGHAGVL 494
           PA+ + R     ++P  +CP T H G L
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPFTEHLGYL 207


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 349 SSLKNHYFHCFITYSVGRK 405
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 328 VGDRFARSSLKNHYFHCFI 384
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 260 GKKTLLSLTXVWHCKE 307
           G KTLLS T +W  ++
Sbjct: 233 GMKTLLSETDIWEVEQ 248


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 328 VGDRFARSSLKNHYFHCFI 384
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 323 ATPLMSPYNARLXSSSTGSSFPAI 252
           A  + SP   +   SSTGSS P +
Sbjct: 347 AKQMASPEPPKSSESSTGSSIPKL 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,760
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)