Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0021
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.70
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 31 0.70
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 3.7
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 3.7
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 6.5
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 6.5
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 28 6.5
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 8.6
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 8.6
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 8.6
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 453 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 307
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -2
Query: 567 SLTDVPPQSNSPPGSVLEPDTREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 388
S T PP S +PPG P + +A S ATSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSS---SAVS-PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 387 S 385
S
Sbjct: 225 S 225
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 126 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 16
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 126 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 16
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 417 DRAPLPPNRVSNETMKVVVFQRRSRET 337
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 468 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 331
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 138 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENSGERR 269
G +P + +SD + INE+ P +AK +E + +G +R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 408 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 298
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 408 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 298
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 456 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 361
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,827
Number of Sequences: 28952
Number of extensions: 342116
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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