Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0014
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1100 + 8716853-8716860,8717739-8717844,8717931-8718015,871... 29 0.99
01_01_1024 + 8083372-8083758,8083970-8084149,8084261-8084590,808... 29 1.3
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 28 2.3
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 2.3
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 4.0
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 27 4.0
12_02_0423 + 18944555-18945226,18945309-18945545 27 5.3
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328... 27 5.3
04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215 27 5.3
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 27 7.0
>01_01_1100 +
8716853-8716860,8717739-8717844,8717931-8718015,
8718632-8718715,8718969-8719073,8719621-8719898
Length = 221
Score = 29.5 bits (63), Expect = 0.99
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 185 KTKFPSAQK---AQGAPQSSGKSHDEPRRHQNQRQSEKSARG 301
+++F S K +QG+ QS G+ EP NQ++ ++S+ G
Sbjct: 136 RSRFTSGSKNRSSQGSAQSLGQQSAEPAHKHNQKRKDESSLG 177
>01_01_1024 +
8083372-8083758,8083970-8084149,8084261-8084590,
8084679-8084792,8084942-8085682
Length = 583
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 218 GAPQSSGKSHDEPRRHQNQRQSEKSARGR 304
GA ++GKSHD+ + N R++ S R R
Sbjct: 266 GAAGAAGKSHDQQAQDANMRKARVSVRAR 294
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 204 AEGNLVFRC*SSNICSILLRLLSGRRTIIFPSVVQQ 97
A+GNL +C + +LL ++SG+R P+ +++
Sbjct: 699 AQGNLTLKCDVYSFGVVLLEIISGKRNRTLPTFLRE 734
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 203 AQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGR 304
AQ+ + ++SGK+ D+ +RH S+ AR R
Sbjct: 540 AQRGKEKEENSGKNVDKRKRHDTDSDSDSHARER 573
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 164 MFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQ 268
M + HL T+F + +Q + G SH +PR HQ
Sbjct: 557 MVKYAHLVTQFKKFE-SQALDKDKGGSHAKPREHQ 590
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 132 SRIINAVRLNRCLNFSI*KPSFPRLKKRKELLSHLGNLMTNQDGTKISGRARNRQEDDSS 311
SR++NAV ++ N I S P+L ++KELLS L + G R R E +
Sbjct: 679 SRLVNAVVIDANKN-QIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRPVYECTDA 737
Query: 312 KV 317
+V
Sbjct: 738 QV 739
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 200 SAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGR 304
+A+ +G +S HD+ R H + Q+ +SA R
Sbjct: 135 AAEAKKGGAAASHDDHDDGRHHHHHNQAVQSAAAR 169
>07_01_0431 +
3283252-3283274,3283684-3283819,3285839-3286682,
3286785-3286856,3286906-3286937,3287020-3287433
Length = 506
Score = 27.1 bits (57), Expect = 5.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 80 HFGVKRCWTTDGK 118
H +KRCWT+DG+
Sbjct: 99 HHHIKRCWTSDGQ 111
>04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215
Length = 257
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +2
Query: 119 IIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQS----- 283
I LP ++I+ ++ HLK + + + S GK H +P+ + +
Sbjct: 92 IAARLPGRTDNEIKNVWHT-HLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPP 150
Query: 284 ---EKSARGRLVESSMAVS 331
E+SA + ESSMA S
Sbjct: 151 ASPERSASSSVTESSMASS 169
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 26.6 bits (56), Expect = 7.0
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +2
Query: 122 IVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAP------QSSGKSHDEPRRHQNQRQS 283
+ LL + + ++FE+ L + SA A AP Q S ++HDE H N+ S
Sbjct: 1200 LALLRETLGDRFSRIFEIS-LAVEASSAVAASFAPPKAHRSQQSSETHDESGNHANEVPS 1258
Query: 284 --EKSARGRLVESSMAVS 331
K + V+ S AVS
Sbjct: 1259 NPSKCFNVKAVKVSAAVS 1276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,606
Number of Sequences: 37544
Number of extensions: 190435
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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