Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0002
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical...    29   4.1  
At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical...    29   4.1  
At4g10890.1 68417.m01772 expressed protein                             29   4.1  

>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 313

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 623 DENTFGKCFR*CSSCDDPRISPLTSQYECPQLSLLIITWSSENQQNRTEI 474
           DE    +  R  S+ +  R S L  Q EC QL   + + S+ENQ  R E+
Sbjct: 217 DERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDEL 266


>At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 315

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 623 DENTFGKCFR*CSSCDDPRISPLTSQYECPQLSLLIITWSSENQQNRTEI 474
           DE    +  R  S+ +  R S L  Q EC QL   + + S+ENQ  R E+
Sbjct: 219 DERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDEL 268


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 578 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 694
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,204
Number of Sequences: 28952
Number of extensions: 297186
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)