Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20933
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 89 4e-19
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 1.3
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 27 1.8
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 27 1.8
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 27 1.8
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 27 2.3
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 7.2
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 25 9.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.5
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 89.0 bits (211), Expect = 4e-19
Identities = 41/80 (51%), Positives = 56/80 (70%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
++A++ST VET +P SEI PGL LLG + + F V + YEP+ DG++ Q +IS+S DAT+
Sbjct: 349 YLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATS 408
Query: 182 HFETTCLDVLKIYKHGTGEE 241
HFET DV IYK TG +
Sbjct: 409 HFETLTCDVRDIYKRMTGTD 428
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 113 YYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKSSWNLVKRISK 289
Y+E D G+ + F S YD T +T C +KI + E+ F + N +K K
Sbjct: 125 YFEHSDAGNLLKYF-SGYYDTTIGLKTECGSYVKIVGNSNPREWLFLSDNINELKAARK 182
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 250 EIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 110
+IKFF + +F F SC+ G I R+K L +I W I++
Sbjct: 45 KIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 250 EIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 110
+IKFF + +F F SC+ G I R+K L +I W I++
Sbjct: 65 KIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 108
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 250 EIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 110
+IKFF + +F F SC+ G I R+K L +I W I++
Sbjct: 45 KIKFFLNNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 250 EIKFFPSTMFINFKHIQTSCFKVCGGIIRFRNKYLALATIIDWLIIV 110
+IKFF +F F SC+ G I R+K L +I W I++
Sbjct: 45 KIKFFLDNLFTEFSKFHDSCYP--DGRISTRSK-LRWPLLIIWCILI 88
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 38 DPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDAT 178
+PES + G ++ FV D E + S +FIS S D T
Sbjct: 174 EPESMLDAEKKSSGILQTLFVGHKDIVERVRSLESSSVFISASADNT 220
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 104 VTDYYEPI-DDGSQSQIFISESYDATTHFETTCLDVL 211
+ YY P DDG + + + + Y+A FE D++
Sbjct: 21 LNSYYGPFYDDGDNTGVNVVDLYEAFKVFEENGFDIV 57
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -1
Query: 255 LEKSNSSPV--PCL*ILST--SRQVVSKCVVAS*DSEINIWLWLP 133
L SNS P+ L +LS S VS+ VV+S SEI W W+P
Sbjct: 2960 LSSSNSKPLLTRVLWLLSVDDSHGSVSE-VVSSFKSEIPTWNWIP 3003
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,448
Number of Sequences: 5004
Number of extensions: 41875
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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