Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20933
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 95 3e-20
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 95 4e-20
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 93 2e-19
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 90 1e-18
03_01_0506 + 3816676-3817971 28 5.4
02_05_0748 - 31463559-31464764 28 5.4
11_06_0321 - 22341267-22342565 27 9.5
04_03_0612 + 18023354-18023916,18024046-18024805 27 9.5
03_02_0811 + 11437654-11438958 27 9.5
02_02_0682 - 12923103-12923747,12924607-12924870,12924953-129252... 27 9.5
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 95.1 bits (226), Expect = 3e-20
Identities = 44/84 (52%), Positives = 57/84 (67%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
FIA VST ET+ PESE++PG+ LLG + + F + D YEP+++ S F+S SYDATT
Sbjct: 350 FIAFVSTEAETDHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATT 409
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFETT DVL +Y TG+ D S
Sbjct: 410 HFETTVTDVLNMYTLITGKTVDLS 433
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 94.7 bits (225), Expect = 4e-20
Identities = 43/84 (51%), Positives = 58/84 (69%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
FIA VST ET++P+SE++PG+ LLG + + F + D YEP+++ S F+S SYDATT
Sbjct: 350 FIAFVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATT 409
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFETT DVL +Y TG+ D S
Sbjct: 410 HFETTVTDVLNMYTLITGKAVDLS 433
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
FIA VST E + PE E++PG+ LLG + + F + D YEP + + F++ SYDATT
Sbjct: 350 FIAFVSTEAEADKPEIELKPGIDLLGPVEETFFDIYDRYEPTNTADEDNCFVTNSYDATT 409
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFETT DVL +Y TG+E D S
Sbjct: 410 HFETTVKDVLALYSKITGKELDLS 433
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 89.8 bits (213), Expect = 1e-18
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
FIA VS E+ +P +E++PG+ LLG + + F+ D +EP +D S FIS SYDATT
Sbjct: 368 FIAFVSAQAESENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATT 427
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFE+T +DVL IY TG+ D S
Sbjct: 428 HFESTVMDVLSIYTKITGKTVDLS 451
>03_01_0506 + 3816676-3817971
Length = 431
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 233 GEEFDFSKSSWNLVKRISK*LRGL 304
GEE+D + SW +++ +S+ L G+
Sbjct: 299 GEEYDLKRRSWRVIENMSEGLNGV 322
>02_05_0748 - 31463559-31464764
Length = 401
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 233 GEEFDFSKSSWNLVKRISK*LRG 301
GEE+D K +W +++ +S+ L G
Sbjct: 269 GEEYDLEKGTWRVIENMSEGLNG 291
>11_06_0321 - 22341267-22342565
Length = 432
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 233 GEEFDFSKSSWNLVKRISK*LRG 301
GEEFD K +W L+ ++ L G
Sbjct: 300 GEEFDLEKGTWRLIPDMASGLNG 322
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 189 KQLVWMCLKFINMVLGKNLISLSQA 263
K L +CL+++N V+ K++I LSQ+
Sbjct: 223 KALERLCLEYVNGVIDKDMIVLSQS 247
>03_02_0811 + 11437654-11438958
Length = 434
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 111 SVTDTNFCLMAPKRAKP 61
+ TD FCL AP RAKP
Sbjct: 343 NTTDPYFCLSAPLRAKP 359
>02_02_0682 - 12923103-12923747,12924607-12924870,12924953-12925219,
12925301-12925529,12925614-12926295,12926409-12926682,
12926822-12927347,12927460-12927698,12927799-12927896,
12928017-12928020,12928657-12928832,12929593-12929647,
12930787-12931047
Length = 1239
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 99 TNFCLMAPKRAKPGLISDSGSLVSTVV 19
TN CL P L+ +SGS STVV
Sbjct: 1015 TNLCLRIPSGKTVALVGESGSGKSTVV 1041
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,612,740
Number of Sequences: 37544
Number of extensions: 220446
Number of successful extensions: 394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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