Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20933
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   3e-13
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)                    47   8e-06
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/49 (63%), Positives = 42/49 (85%)
 Frame = +2

Query: 2   FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQ 148
           ++A+VSTTVET DPE E+ PGL LLG I +KFVSV++ YEP+DDG++S+
Sbjct: 19  YLAIVSTTVETADPEKELEPGLKLLGKIDEKFVSVSNLYEPLDDGTESK 67


>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
          Length = 175

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 24/57 (42%), Positives = 30/57 (52%)
 Frame = +2

Query: 86  RQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSK 256
           R K V     Y P       Q+FI +S DA +HF   C D+  +Y+  TGE FDFSK
Sbjct: 110 RAKIVLGDSSYFPDKVKKVGQVFIPKSCDALSHFNKDCQDIEDLYERITGEPFDFSK 166


>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 354  SLNKQLNNK--QYTYYFFMRPLSYLLILF-TKFQLDLEKSNSSPV 229
            S+N QL     +Y YY F+RP   LL+ F ++  L     NSS +
Sbjct: 899  SINTQLAVALIRYKYYLFLRPADILLLNFISESALTFSSHNSSRI 943


>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 139 ATIIDWLIIVSH*YKLLP 86
           A ++DWL+ V+  YKLLP
Sbjct: 225 AILVDWLVEVAEEYKLLP 242


>SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 14  VSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFET 193
           +ST V   +  +EIR  L     +    VS    Y  I++GS+      +  D   H   
Sbjct: 742 ISTPVPPEEFRNEIRKCLQKAALVNYTRVSA---YAQIEEGSKEDAPPDKRLDDIMHLAE 798

Query: 194 TCLDVLK 214
            C+D+L+
Sbjct: 799 LCIDLLQ 805


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,942
Number of Sequences: 59808
Number of extensions: 261212
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)