Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20933
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 127 6e-30
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 127 6e-30
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 127 6e-30
Z81084-2|CAB03107.1| 276|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z68298-8|CAA92605.3| 449|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical ... 27 8.6
AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin monoox... 27 8.6
AF024500-6|AAB70361.1| 357|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 127 bits (306), Expect = 6e-30
Identities = 56/84 (66%), Positives = 72/84 (85%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
++AMVSTTVET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDATT
Sbjct: 365 YLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATT 424
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFETTC DVL +++ GT +EFDF+
Sbjct: 425 HFETTCKDVLNMFERGTTKEFDFT 448
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 127 bits (306), Expect = 6e-30
Identities = 56/84 (66%), Positives = 72/84 (85%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
++AMVSTTVET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDATT
Sbjct: 350 YLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATT 409
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFETTC DVL +++ GT +EFDF+
Sbjct: 410 HFETTCKDVLNMFERGTTKEFDFT 433
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 127 bits (306), Expect = 6e-30
Identities = 56/84 (66%), Positives = 72/84 (85%)
Frame = +2
Query: 2 FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
++AMVSTTVET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDATT
Sbjct: 350 YLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATT 409
Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
HFETTC DVL +++ GT +EFDF+
Sbjct: 410 HFETTCKDVLNMFERGTTKEFDFT 433
>Z81084-2|CAB03107.1| 276|Caenorhabditis elegans Hypothetical
protein F46A9.2 protein.
Length = 276
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 336 NNKQYTYYFFMRPLSYLLILFTKFQLDLEKSNSSPVPC 223
+++Q+TY FF+ PL+ L I T F++ +KS V C
Sbjct: 40 HDEQWTYNFFITPLN-LNISPTDFKIPNDKSVKYTVKC 76
>Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical
protein K08C7.2 protein.
Length = 533
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 88 PNGTQKSQTRSDFRFRIIGLNSSRDH 11
PN QK + + DF+ RII +S +DH
Sbjct: 156 PNWPQKFRGQDDFKGRIIHSHSYKDH 181
>Z68298-8|CAA92605.3| 449|Caenorhabditis elegans Hypothetical
protein F44D12.9 protein.
Length = 449
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 301 TSQLFTDPLHQVPA*LREIKFFPSTMFINF 212
T +++DP + + + + FFP T F+NF
Sbjct: 291 TDSVYSDPTNGITSVFGDSLFFPITTFLNF 320
>AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical
protein Y6B3B.10 protein.
Length = 360
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 357 FSLNKQLNNKQYTYYFFMRPLSYLL--ILFTKFQL 259
F L K+ N + Y YYF M +++L I++ F+L
Sbjct: 231 FYLKKRTNRQYYKYYFLMGNAAFILFAIIWVIFRL 265
>AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 533
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 88 PNGTQKSQTRSDFRFRIIGLNSSRDH 11
PN QK + + DF+ RII +S +DH
Sbjct: 156 PNWPQKFRGQDDFKGRIIHSHSYKDH 181
>AF024500-6|AAB70361.1| 357|Caenorhabditis elegans Hypothetical
protein K06H6.1 protein.
Length = 357
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 396 LNMKYYKVTIH*GFSLNKQLNNKQY-TY-YFFMRP 298
LN++ YKV H GF ++LN Y T+ Y +RP
Sbjct: 38 LNLQEYKVKTHKGFITMEELNENVYKTFGYKIIRP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,092
Number of Sequences: 27780
Number of extensions: 224164
Number of successful extensions: 476
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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