Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20933
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i...    97   7e-21
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i...    91   3e-19
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...    80   1e-15
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase fa...    28   4.5  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   6.0  
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom...    27   7.9  

>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
           identical to GDP dissociation inhibitor [Arabidopsis
           thaliana] GI:1655424
          Length = 445

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +2

Query: 2   FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
           FIA VST  ET++P++E++PG+ LLG + + F  + D YEP+++ +    FIS SYDATT
Sbjct: 350 FIAFVSTDAETDNPQTELQPGIDLLGPVDELFFDIYDRYEPVNEPTLDNCFISTSYDATT 409

Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
           HF+TT +DVL +YK  TG+E D S
Sbjct: 410 HFDTTVVDVLNMYKLITGKELDLS 433


>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
           identical to Rab GDP dissociation inhibitor AtGDI2
           [Arabidopsis thaliana] GI:2446981
          Length = 444

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +2

Query: 2   FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
           FIA VST  ET++P++E++PG  LLG + + F  + D YEP+++      FIS SYDATT
Sbjct: 350 FIAFVSTDAETDNPQTELKPGTDLLGPVDEIFFDMYDRYEPVNEPELDNCFISTSYDATT 409

Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
           HFETT  DVL +Y   TG++ D S
Sbjct: 410 HFETTVADVLNMYTLITGKQLDLS 433


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 38/84 (45%), Positives = 52/84 (61%)
 Frame = +2

Query: 2   FIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATT 181
           +IA VS   ET++PE E++PG+ LLG   + F    D Y P +   +   FIS +YDATT
Sbjct: 270 YIAFVSAEAETDNPEEELKPGIELLGPTDEIFYHSYDTYVPTNIQEEDNCFISATYDATT 329

Query: 182 HFETTCLDVLKIYKHGTGEEFDFS 253
           HFE+T +DVL +Y   TG+  D S
Sbjct: 330 HFESTVVDVLDMYTKITGKTLDLS 353


>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           lysosomal phospholipase A2 [Mus musculus] GI:18699602;
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 535

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 248 NQILPQYHVYKF*AHPDKLFQSVWWHHKIPK*IFGFGYHHRLAHNSQSLIQTFA 87
           + I+ +  VY F  H + + + + W  +  K +FGFGY  R ++  Q  +  FA
Sbjct: 111 DMIVGRESVYYF--H-EMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQFA 161


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 96  NFCLMAPKRAKPGLISDSGSLVSTVVETI 10
           NFCL  P      L+  SGS  STVV  I
Sbjct: 388 NFCLSVPAGKTIALVGSSGSGKSTVVSLI 416


>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to SP|P40748
           Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 1027

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 213 KFINMVLGKNLISLSQAGTW 272
           KF+N+  GK L+SLS  G W
Sbjct: 112 KFVNIECGKILLSLSLQGKW 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,774,934
Number of Sequences: 28952
Number of extensions: 201770
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)