Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20929
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   2.5  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   5.7  

>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 312 SFRLPNFNSTKYFSTLVSNNNKIDNFYVALKTASVFPKY 196
           SF  PN     YF  L S + +   F++ +  + V+P Y
Sbjct: 66  SFTFPNVPDEIYFLRLESIDYEFSEFHIIINESIVYPYY 104


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 631 LQSFHLYYYWQVLQSLFTIY-MNITIYLNT 545
           L  FHL Y+  +  S+FT+Y +  T+  NT
Sbjct: 404 LHDFHLTYFCALTLSVFTVYPLASTLAFNT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,228
Number of Sequences: 5004
Number of extensions: 37656
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)