Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20929
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine re...    28   5.3  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    27   9.2  

>U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical
           protein T05A7.2 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 351 NDSKIYKLFLEIRSFRLPNFNSTKYFSTLVSNNNKIDN 238
           N +K  KLF      R    N   Y  TLV+  N IDN
Sbjct: 31  NSNKCLKLFSSAVKHRTAEANCASYGGTLVNIRNSIDN 68


>AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine
           receptor, class z protein82 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -3

Query: 625 SFHLYYYWQVLQSL----FTIYMNITIYLN 548
           S   Y YWQ L SL    FTI M I IYL+
Sbjct: 222 SLQKYIYWQTLTSLILESFTIIMCILIYLS 251


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 628 QSFHLYYYWQVLQSLFTIYMNITIYLNTFIA 536
           +S  L Y+ Q+LQ+   I+  ++ YL  F+A
Sbjct: 90  KSLLLVYWTQILQAFRDIFQRVSAYLGMFLA 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,329
Number of Sequences: 27780
Number of extensions: 195433
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)