Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20929
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.1  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 399 YSNFD*TNIYNFTLLHYNAV 458
           Y+N++  N  N+  L+YN +
Sbjct: 338 YNNYNNNNYNNYKKLYYNII 357


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 423 IYNFTLLHYNAVYWTF 470
           I+  + + +NA+YW F
Sbjct: 471 IFPVSFMLFNAIYWIF 486


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 604 NNNINENFAMHLINY*NLKNGC 669
           ++  +E+F  H  N   L+NGC
Sbjct: 362 HHTASESFMKHYENEMRLRNGC 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,878
Number of Sequences: 438
Number of extensions: 3134
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)