Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20914
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788...    28   2.8  
09_04_0432 + 17510820-17510996,17511076-17511546                       28   3.7  
04_04_1170 + 31449978-31450135,31451625-31451661,31452158-314522...    28   3.7  
04_04_0770 - 27964487-27964734,27965339-27965588                       27   6.5  

>03_02_0375 +
           7880543-7880872,7881291-7881365,7881445-7881531,
           7881619-7881723,7881806-7881876,7882552-7882840
          Length = 318

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 78  RRSAASLAHLSISQSDETDA*AQEARSHQPLPRRTQGADGQRSTI 212
           R   A  A  S ++ DE D+   +   H PL R  +G + Q+ST+
Sbjct: 75  RAKKAGNAGASKAKKDEDDSGDDDDDYHVPLSRSNKGKEKQKSTV 119


>09_04_0432 + 17510820-17510996,17511076-17511546
          Length = 215

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 139 ERKRRARINRCLDELKELMVSA 204
           ERKRR RIN  LD L+ L+ SA
Sbjct: 36  ERKRRERINAHLDTLRGLVPSA 57


>04_04_1170 +
           31449978-31450135,31451625-31451661,31452158-31452273,
           31452389-31452419,31452597-31452662,31452753-31452818,
           31452969-31453223,31453598-31453687
          Length = 272

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 76  EDGPQPVSRTYQYRKVMKPMLERKRRA-RINRCLDELKELMVSALQSEGENVAKLEKA 246
           E   Q   +T + R V+  ++ RKRR  RIN  L  L+EL+ +  ++  + V+ L++A
Sbjct: 91  EAASQEEEQTPKLRSVIAHLVSRKRRRDRINEKLKALQELLPNCTKT--DKVSMLDEA 146


>04_04_0770 - 27964487-27964734,27965339-27965588
          Length = 165

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 121 VMKPMLERKRRARINRCLDELK-ELMVSALQSEGENVAKLEKADILN 258
           V K   E+K + RI +   E     M   L+  GE++AK+EK + LN
Sbjct: 108 VAKVDQEKKEKLRIVKAKSEANIGAMPMVLKRIGESIAKIEKLEHLN 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,586,253
Number of Sequences: 37544
Number of extensions: 210104
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)