Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20914
(433 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38739| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 9e-08
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18) 52 2e-07
SB_23535| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_59476| Best HMM Match : HLH (HMM E-Value=1.2e-15) 52 3e-07
SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_38740| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_47705| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.076
SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05) 31 0.53
SB_57929| Best HMM Match : K-box (HMM E-Value=4.3) 30 0.71
SB_56044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_39813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_25294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_34095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15) 27 6.6
SB_31471| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_14801| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 27 8.7
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 27 8.7
>SB_38739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 53.2 bits (122), Expect = 9e-08
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
RK KPM+E+ RRARIN L+ELK L++ L + +K+EKADIL
Sbjct: 20 RKAKKPMMEKLRRARINDSLNELKVLVLELLNKDASRYSKMEKADIL 66
>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
Length = 722
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +1
Query: 127 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
KPM+E++RRARIN+ L+ELK L++ A++ + +KLEKADIL
Sbjct: 469 KPMMEKRRRARINQSLNELKILILEAMKKDTSCYSKLEKADIL 511
Score = 31.5 bits (68), Expect = 0.31
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 324 VDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTH 431
V ++RAGF A EV+R + VD+++ T++++H
Sbjct: 538 VAQYRAGFNECALEVTRYFMANDNVDLQMKTRILSH 573
>SB_23535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
RK KP++E++RR RINR L+ELK L++ A + KLEKADIL
Sbjct: 21 RKWSKPVMEKRRRERINRSLEELKRLVLEAQHRDCSRYTKLEKADIL 67
>SB_59476| Best HMM Match : HLH (HMM E-Value=1.2e-15)
Length = 272
Score = 51.6 bits (118), Expect = 3e-07
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILN 258
RK + ++E+KRR RINRCL EL+ L+ +AL+ EG +KLEKA+IL+
Sbjct: 12 RKRRRGLIEKKRRDRINRCLVELRRLVPTALEKEGS--SKLEKAEILH 57
>SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
+K KP +E+ RRARIN L+ELK L++ A++ + +K+EKADIL
Sbjct: 22 KKSKKPQMEKLRRARINDSLNELKSLVLEAMKKDASRYSKMEKADIL 68
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 228 SQIGKS*YLELTVXXXXXXXXXXXXXXNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVR 407
S++ K+ LE+TV +PT + ++RAG+ A EV+R L S V +
Sbjct: 60 SKMEKADILEMTVKYLRSAPEKQSKISDPT-SLAKYRAGYNECAAEVTRFLLSSENVSDQ 118
Query: 408 LGTQLMTH 431
L TQL++H
Sbjct: 119 LRTQLLSH 126
>SB_38740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
R++MKP+ ER RR RIN L ELK L++SAL + +++EKADIL
Sbjct: 23 RRIMKPITERLRRERINSSLKELKFLVLSALGQDVSRYSRMEKADIL 69
>SB_47705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 48.4 bits (110), Expect = 2e-06
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 5/51 (9%)
Frame = +1
Query: 118 KVMKPMLERKRRARINRCLDELKELMVSAL-----QSEGENVAKLEKADIL 255
K KP+LER+RRARIN L+ELK L++S+L Q+E +N K+EKA+IL
Sbjct: 20 KSSKPLLERQRRARINHSLNELKTLVLSSLYQNCPQAE-QNCEKMEKAEIL 69
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 33.5 bits (73), Expect = 0.076
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
+K K ER+RR RIN+ L+ELK ++ L +NV KLE A IL
Sbjct: 19 QKATKSYAERQRRTRINKSLEELK---LTVLGPSYQNV-KLEHAAIL 61
>SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05)
Length = 218
Score = 30.7 bits (66), Expect = 0.53
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 115 RKVMKPMLERKRRARINRCLDELKELMVSALQ 210
+K+ K +E+KRR+RIN L+EL+ L++ Q
Sbjct: 15 KKLSKLKMEKKRRSRINTSLNELRCLLLDHRQ 46
>SB_57929| Best HMM Match : K-box (HMM E-Value=4.3)
Length = 213
Score = 30.3 bits (65), Expect = 0.71
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLE 240
AED P PVS+ Q K + LE +R N +E ELM L+ +G K++
Sbjct: 120 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSNLFTEE--ELMRCTLKGKGRTSNKMQ 173
>SB_56044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 209 NLKERM*PNWKKLIS*TDRSPSSQAETPASLVTQPYRGCGSLQSWIYSRRQRSFPLS 379
+LK+RM NW+K + + S T Q CG+ ++W S RSF +S
Sbjct: 341 DLKDRM-ANWEKFLYGEEDEEKSATSTATPQARQ--NPCGASKAWSISAFTRSFRMS 394
>SB_39813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGEN 225
AED P PVS+ Q K + LE +R N +E ELM L+ +G +
Sbjct: 67 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSNLFTEE--ELMRCTLKGKGRS 115
>SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLE 240
AED P PVS+ Q K + LE +R + +E ELM L+ +G K++
Sbjct: 67 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSDLFTEE--ELMRCTLKGKGRTSNKMQ 120
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLE 240
AED P PVS+ Q K + LE +R + +E ELM L+ +G K++
Sbjct: 212 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSDLFTEE--ELMRCTLKGKGRTSNKMQ 265
>SB_25294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLE 240
AED P PVS+ Q K + LE +R + +E ELM L+ +G K++
Sbjct: 7 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSDLFTEE--ELMRCTLKGKGRTSNKMQ 60
>SB_34095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 72 RGRRSAASLAHLSISQSDETD-A*AQEARSHQP 167
R RRS A AHLS S S+E D A A+S P
Sbjct: 401 RQRRSPAPAAHLSDSDSEEDDPAPVNPAKSTDP 433
>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
Length = 889
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 163 NRCLDELKELMVSALQSEG--ENVAKLEKADILN*PFAIFTS*DASVACH 306
N D +K +V A+ G NVA++E D L P +FT D VA H
Sbjct: 26 NHNADNIK--LVKAILCAGLYPNVARIEHHDKLKRPPRLFTQEDGKVALH 73
>SB_31471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGEN 225
AED P PVS+ Q K + LE +R + +E ELM L+ +G +
Sbjct: 7 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSDLFTEE--ELMRCTLKGKGRS 55
>SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 483
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 46 MSYEIAYSVAEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 195
+S+ A AED +R Q R +E++ R +I+ ++ELK+++
Sbjct: 105 LSHNAAPENAEDKSNTRTRGKQIRSYSHNQIEKRYRDKISNKMNELKDVV 154
>SB_14801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 73 AEDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGEN 225
AED P PVS+ Q K + LE +R + +E ELM L+ +G +
Sbjct: 7 AEDQPSPVSQQKQKIKYLSKPLEGVKRLLSDLFTEE--ELMRCTLKGKGRS 55
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 5 RKRTLLLTTHIHSTCHTRSRIRSRKTVR 88
R + L+LT H H CHT + TVR
Sbjct: 791 RAQFLILTLHAHHFCHTGHDMAVMPTVR 818
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 29 THIHSTCHTRSRIRSRKTVRSQSRAL 106
T S HTRSR RSR RS+S+ L
Sbjct: 442 TRSRSRSHTRSRSRSRIRSRSRSQEL 467
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,847
Number of Sequences: 59808
Number of extensions: 227704
Number of successful extensions: 729
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -