Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20914
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.     46   2e-05
AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cel...    46   2e-05
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical p...    27   7.7  
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    27   7.7  

>AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.
          Length = 173

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 127 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
           KP++E+KRRARIN+ L +LK++++          +K EKADIL
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADIL 68


>AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cell
           lineage protein 22 protein.
          Length = 173

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 127 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADIL 255
           KP++E+KRRARIN+ L +LK++++          +K EKADIL
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADIL 68


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 73  AEDGPQPVSRTYQYRKVMK-PMLERKRRA 156
           AEDG +P+S+T Q RK+ K   +ERK RA
Sbjct: 50  AEDGDKPMSKT-QKRKLKKAAAIERKERA 77


>Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical
           protein T07G12.5 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 151 ASCAQASVSSLCDIDKCARLAADRLPRPNTRSR 53
           ASC  A + S+ D + CA+++    P P+  +R
Sbjct: 284 ASCFAAMIESIGDYNLCAKISKQSRPPPSNTNR 316


>Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical
           protein T09A5.2a protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 19  LTHDTHTFNMSYEIAYSVAED-GPQPVSRTYQ-YRKVMKPMLERKRRARINRCLDELK 186
           +T +   F +S + + SV     PQP     + Y ++++ M E     ++ RC +ELK
Sbjct: 125 MTSNEDRFALSRDSSCSVPRSVSPQPTGDVIKPYPQMVQSMREEGHWKKLQRCAEELK 182


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 139 QASVSSLCDIDKCARLAADRLPR 71
           QA   S C+ DKC RL AD +PR
Sbjct: 343 QAKYVSECE-DKCYRLLADTMPR 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,378
Number of Sequences: 27780
Number of extensions: 161850
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)