Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20914
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family pr... 29 1.8
At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative si... 28 2.4
At3g56770.1 68416.m06314 basic helix-loop-helix (bHLH) family pr... 28 3.1
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 27 7.2
At1g64385.1 68414.m07297 expressed protein 27 7.2
At3g47750.1 68416.m05202 ABC transporter family protein probable... 26 9.6
At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6) n... 26 9.6
At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6) n... 26 9.6
At1g16480.1 68414.m01971 pentatricopeptide (PPR) repeat-containi... 26 9.6
>At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 145
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 133 MLERKRRARINRCLDELKELMVSALQSE 216
+L++KRR RI R L+ LKE+ + QS+
Sbjct: 73 LLKKKRRERIRRQLETLKEITPNCPQSD 100
>At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase (EC 2.4.1.14)
isoform 1 - Citrus unshiu, EMBL:AB005023
Length = 1043
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 4 SQTYALTHDTHTFNMSYEIAYSVAEDGPQPVSRTYQYRKVMKPMLERKRRARINR 168
+ TY + +S +++ V Q + ++ P+LERK RARI R
Sbjct: 361 NSTYKIMRRIEGEELSLDVSEMVITSTRQEIDEQWRLYDGFDPILERKLRARIKR 415
>At3g56770.1 68416.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 230
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +1
Query: 139 ERKRRARINRCLDELKELM 195
ERKRRARIN L++L++L+
Sbjct: 53 ERKRRARINSHLNKLRKLL 71
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 76 EDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKL 237
E+ SR M + ER+RR +IN + L++L+ + E ++V+ L
Sbjct: 243 EEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKVESDSVSTL 296
>At1g64385.1 68414.m07297 expressed protein
Length = 351
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 166 RCLDELKELMVSALQSEGENVAKLEKADILN 258
RC ELK+L +A ++E ++ + + ILN
Sbjct: 207 RCRLELKDLAAAAHETESDDTVSVSRPSILN 237
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 26.2 bits (55), Expect = 9.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = -1
Query: 178 RRGSG*CERASCAQASVSSLCDIDKCA------RLAADRLPRPNTR 59
+ G G CER SC SSL CA L ++PRP TR
Sbjct: 71 KNGDGKCERKSCG-LQYSSLTQASFCAFPNPPPLLPLLQIPRPETR 115
>At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 326
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 175 DELKELMVSALQSEGENVAKLEKADILN*PFAIFTS*DASVACHSTLP 318
DEL + VSAL SE ++A + + N + A +ACH + P
Sbjct: 49 DELLSVAVSALSSEAASIAPEIRRNDDNVSLTVI---KAKIACHPSYP 93
>At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 327
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 175 DELKELMVSALQSEGENVAKLEKADILN*PFAIFTS*DASVACHSTLP 318
DEL + VSAL SE ++A + + N + A +ACH + P
Sbjct: 52 DELLSVAVSALSSEAASIAPEIRRNDDNVSLTVI---KAKIACHPSYP 96
>At1g16480.1 68414.m01971 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 905
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 219 SFRL*SADHQLLEFVEAAVDASAPLALKHRFHHFAI-LISARDW 91
+ R+ S H + +FV + L ++RFHHF L S +D+
Sbjct: 861 NLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDY 904
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,660
Number of Sequences: 28952
Number of extensions: 154295
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -