Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20909
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 52 2e-08
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 1.2
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.2
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 2.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 4.9
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 25 4.9
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 24 6.4
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 24 6.4
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 24 6.4
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 24 6.4
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 24 8.5
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 52.4 bits (120), Expect = 2e-08
Identities = 33/101 (32%), Positives = 52/101 (51%)
Frame = +2
Query: 62 MKIYKDIITGDEMFSDTYKMKLVDEVIYRSDR*VGDESTG*YPDRGF*SFXXXXXXXXXX 241
M +YKD+I+GDE+ SD Y +K VD+++Y +D + G D G
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEE 60
Query: 242 XXXXXVDIVLNHRLVETYAFGDKKSYTLYLKGLYEKISSKI 364
++V + RL T +F DKKSY Y+KG + I +++
Sbjct: 61 GTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARL 99
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 99 ISSPVIMSL*IFILMDWRRLKII 31
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 121 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 11
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 354 LIFSYSPLRYNV*DFLSPKAYVSTS 280
L FS+ P + NV D + AYV TS
Sbjct: 191 LPFSFMPAKANVNDLFNISAYVDTS 215
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 4.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 201 FNPSAEEADEGTDSAVESELT*S*TTG*SKHTPSVTRNPT 320
+NPS D G V+S T S T T S+T PT
Sbjct: 826 YNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPT 865
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 201 FNPSAEEADEGTDSAVESELT*S*TTG*SKHTPSVTRNPTHCT 329
F+P+ + G S ES T + T + TP+ TR ++ T
Sbjct: 164 FSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTT 206
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 208 GLKPSIWISPCALVTNLPVTSVNNFIDQFHFV 113
G +P++ LVT L NF+D F V
Sbjct: 489 GYRPTLVFLDAGLVTKLSTQDQKNFLDLFQAV 520
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 195 EGFNPSAEEADEGTDSAVESEL 260
+G + SA + D TDS VESE+
Sbjct: 98 DGVHVSAVQLDNETDSEVESEV 119
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 44 RLQSIKMKIYKDIITGDEMFSDTYKMKLVDEVIYRSD 154
+L S+KM I+ DE++ TY +D ++ RSD
Sbjct: 1120 QLHSMKMNEINRIV--DELWKQTYCGTDIDTILIRSD 1154
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 77 DIITGDEMFSDTYKMKLVDEVIYRSDR*VGDES 175
D++ GD +F + + VD V+ S+ V DES
Sbjct: 331 DLVVGDVLFVEAGDVVPVDGVLIESNNLVLDES 363
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +1
Query: 28 FYYF*SPPIHQNEDL*GHYHW 90
++Y PP H E H+HW
Sbjct: 45 YWYPPPPPRHHKEHKKSHHHW 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,861
Number of Sequences: 5004
Number of extensions: 25639
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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