Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20909
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    31   0.21 
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    28   2.6  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   3.4  
03_05_0240 - 22263189-22263815                                         27   4.5  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    26   7.9  
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    26   7.9  
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856           26   7.9  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
 Frame = +2

Query: 62  MKIYKDIITGDEMFSDTYKMKLVDE-VIYRSD-----R*VGDESTG*YPDRGF*SFXXXX 223
           M +Y+D++TGDE+ SD++  + ++  +++  D     +   D   G  P     +     
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPS----AEGGGD 56

Query: 224 XXXXXXXXXXXVDIVLNHRLVETYAFGDKKSYTLYLKGLYEKISSKI 364
                      VDIV   RL E   F DKK +  ++K   + +S+K+
Sbjct: 57  DEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKL 102


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 168 TRAQGDIQIEGFNPSAEEADEGTDSAVES 254
           TR+   +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855


>06_01_1128 +
          9300144-9300273,9300340-9300472,9300585-9300656,
          9300783-9300926,9301453-9301524,9301584-9301677,
          9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 9  EKPFFRFLLFLIASNPS 59
          E PFF FLL L++S+PS
Sbjct: 2  EAPFFFFLLLLVSSSPS 18


>03_05_0240 - 22263189-22263815
          Length = 208

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 26  VFIIFNRLQSIKMKIYKDIITGDEMFSDTYKMKLVDEVIYRSDR*VGDE 172
           VF++ NR + +   I KD+  GDE+  D + +   +E+I   D  VGDE
Sbjct: 68  VFVV-NRKEEL---IEKDVEVGDEIHKDVFVVDWKEELI-EGDVQVGDE 111


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 17  VLSVFIIFNRLQSIKMKIYKDIITGDEMFSDTYKM--KLVDEVI--YRSDR*VGDEST 178
           V +   I  R   + +KI+ + ITG E  SD +     LVD +I  Y+ D   G E T
Sbjct: 151 VHNCLFIAKRRWGLDIKIFSNTITGFEKESDKWVQVASLVDNIISFYKYDHYSGSEWT 208


>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 42  IASNPSK*RSIRTLSLVMRCSLTLTK*NWSMKLFTEVTGRLVT 170
           ++S+ +  RS+R L   + C   LTK   ++ +F E+  R+ T
Sbjct: 140 LSSDSTVKRSVRALKRFLFCDEDLTKLAAAVTIFNEIDSRMKT 182


>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
          Length = 272

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 314 ISCHRRRMFRLA--CGSGLCQLALDGRV 237
           +S H+R++FR+A   G  L  L  DGRV
Sbjct: 31  LSSHQRKVFRVADHAGVALAGLTADGRV 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,417
Number of Sequences: 37544
Number of extensions: 157334
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)