Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20909
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   2.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   6.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   6.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   6.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    20   8.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    20   8.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 126 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 22
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 103 EHLITSDNVLIDLHFDGLEAIKNNKN 26
           E   TSD    D+H++G++ I + ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQS 306


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 103 EHLITSDNVLIDLHFDGLEAIKNNKN 26
           E   TSD    D+H++G++ I + ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQS 306


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 103 EHLITSDNVLIDLHFDGLEAIKNNKN 26
           E   TSD    D+H++G++ I + ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQS 306


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 92  DEMFSDTYKMKLVDEVI 142
           +E++SD Y    +DE++
Sbjct: 20  EELYSDKYDYVNIDEIL 36


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 273 TTG*SKHTPSVTRNPTHCTSKDYM 344
           T G  ++TP V +   H    DY+
Sbjct: 500 TRGWGEYTPVVYKKTPHAMGLDYV 523


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 92  DEMFSDTYKMKLVDEVI 142
           +E++SD Y    +DE++
Sbjct: 20  EELYSDKYDYVNIDEIL 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,076
Number of Sequences: 438
Number of extensions: 1929
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)