Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20909
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05540.1 68416.m00607 translationally controlled tumor family...    34   0.025
At3g16640.1 68416.m02127 translationally controlled tumor family...    31   0.18 
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    29   0.95 
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb...    27   2.9  
At5g01050.1 68418.m00008 laccase family protein / diphenol oxida...    26   6.7  
At2g29810.1 68415.m03621 kelch repeat-containing F-box family pr...    26   6.7  
At1g53210.1 68414.m06031 sodium/calcium exchanger family protein...    26   8.8  

>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = +2

Query: 62  MKIYKDIITGDEMFSDTYKMKLVDE-VIYRSDR*VGDESTG*YPDRGF*SFXXXXXXXXX 238
           M +Y+DI+TGDE+ SD++  K ++  +++  +   G   +G   + G             
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVE---GKNPSG---EEG------GEDEGVD 48

Query: 239 XXXXXXVDIVLNHRLVETYAFGDKKSYTLYLKGLYEKISSKI 364
                 VDI+   RL E  +F DKK + +++K   +++S K+
Sbjct: 49  DQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKL 89


>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 62  MKIYKDIITGDEMFSDTYKMKLVDEVI 142
           M +Y+D++TGDE+ SD++  K ++  I
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGI 27


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 153 TGRLVTRAQGDIQIEGFNPSAEEADEGTDS 242
           +G  +T  +G+   EGF P+AEEAD+G  S
Sbjct: 261 SGAFITIGEGE---EGFLPTAEEADDGIGS 287


>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
           gb|T22270 and gb|T76886 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 274

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 323 MCRISCHRRRMFRLACGSGLCQLAL 249
           +C IS   RR+FRL+C   L  L L
Sbjct: 29  LCCISISSRRLFRLSCDDSLWDLLL 53


>At5g01050.1 68418.m00008 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], lac110 laccase, Populus
           trichocarpa, EMBL:PTY13773
          Length = 586

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 196 SIWISPCALVTNLPVTSVNNFIDQF 122
           S+W+    ++T  P+   NNF  QF
Sbjct: 92  SVWMDGANMITQCPIQPSNNFTYQF 116


>At2g29810.1 68415.m03621 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif; similar to SKP1 interacting
           partner 6 (GI:10716957) [Arabidopsis thaliana]
          Length = 383

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 53  SIKMKIYKDIITGDEMFSDTYKMKLVDEVIYRS 151
           S+  K Y+D+I+  E+F    ++   + V+Y S
Sbjct: 56  SLISKAYRDLISSPELFQTRSRLGFTEPVLYTS 88


>At1g53210.1 68414.m06031 sodium/calcium exchanger family protein /
           calcium-binding EF hand family protein contains Pfam
           profiles: PF01699 sodium/calcium exchanger protein,
           PF00036 EF hand
          Length = 585

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 136 FIDQFHFVSVREHLITSDN 80
           F+D FH  + REH +  DN
Sbjct: 392 FLDNFHVQTKREHALLGDN 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,459,644
Number of Sequences: 28952
Number of extensions: 133108
Number of successful extensions: 311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)