Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20908
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49889-6|CAA90069.2|  435|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z49887-7|CAA90060.2|  435|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z49889-6|CAA90069.2|  435|Caenorhabditis elegans Hypothetical
           protein T06H11.4 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -2

Query: 368 TALARICVSSVVRFD---PVSSPTS*GYAEIASQGSQLR*EKKVWMVRLVVDGAL-IHKC 201
           +AL R+    V   +   PV++ T  GYA IA  G  L+    V +   +  GA+ I KC
Sbjct: 42  SALGRVVAEEVKSSEDMPPVAASTKDGYAVIAHDGIGLKKMVGVSLAGNIYQGAVEIGKC 101

Query: 200 INADT 186
           +   T
Sbjct: 102 VRIST 106


>Z49887-7|CAA90060.2|  435|Caenorhabditis elegans Hypothetical
           protein T06H11.4 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -2

Query: 368 TALARICVSSVVRFD---PVSSPTS*GYAEIASQGSQLR*EKKVWMVRLVVDGAL-IHKC 201
           +AL R+    V   +   PV++ T  GYA IA  G  L+    V +   +  GA+ I KC
Sbjct: 42  SALGRVVAEEVKSSEDMPPVAASTKDGYAVIAHDGIGLKKMVGVSLAGNIYQGAVEIGKC 101

Query: 200 INADT 186
           +   T
Sbjct: 102 VRIST 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,901
Number of Sequences: 27780
Number of extensions: 182150
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)