Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20903
         (579 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54I34 Cluster: Calponin homology (CH) domain-containin...    33   6.4  
UniRef50_Q6ZS05 Cluster: CDNA FLJ45933 fis, clone PLACE7003639; ...    33   6.4  

>UniRef50_Q54I34 Cluster: Calponin homology (CH) domain-containing
           protein; n=1; Dictyostelium discoideum AX4|Rep: Calponin
           homology (CH) domain-containing protein - Dictyostelium
           discoideum AX4
          Length = 1589

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = -3

Query: 535 HGSSAPNQYIKINNRYNYYFCRI*ALSVTNTCLKSPVRSSCKQRPKK----MLCSKVSGT 368
           HG   P+ Y+K+ N  N++ C    L V++ CL  P     K+  KK    +L   + G+
Sbjct: 154 HGKKGPS-YMKLEN-INFFLCACLELGVSSNCLFLPTDLYEKKNLKKVIYCLLALSIQGS 211

Query: 367 KTAMETKL 344
           K   + KL
Sbjct: 212 KRGFKHKL 219


>UniRef50_Q6ZS05 Cluster: CDNA FLJ45933 fis, clone PLACE7003639;
           n=2; Homo sapiens|Rep: CDNA FLJ45933 fis, clone
           PLACE7003639 - Homo sapiens (Human)
          Length = 190

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 240 HLNILINVSCFCKNLL*SHIH----PSRSVHVACLKLWASFVSIAVFVPLTLLHSIFFGL 407
           HL++ ++ S F  + L   +H    P  S+ ++ L  WA  VS+++F  L L  S+ F +
Sbjct: 52  HLSLWLSQSLFAPHCLCLSLHLSSFPGLSLSLSSL-FWAFSVSVSLFFSLLLSVSVHFSV 110

Query: 408 CL 413
           CL
Sbjct: 111 CL 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,204,622
Number of Sequences: 1657284
Number of extensions: 11064397
Number of successful extensions: 23512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23502
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)