Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20903
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    27   1.5  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   6.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.0  

>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 216 NPLYLRVSHLNILINVSCFCKNLL*SHIHPSRSVHVACLKLWAS 347
           NP + +VS L   +N+S F   L+ S  +PSR   +    +W +
Sbjct: 94  NPSFEKVSELLYFLNISTFPIELVISKYNPSRQFLLRVHIMWTT 137


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 HCARLKFSFNCKPNIRIMRVLG 194
           HC +LK SFN   N+ + R++G
Sbjct: 6   HCCKLKHSFNGLRNVALKRLVG 27


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 228 LRVSHLNILINVSCFCKNLL*SHIHPSRSVHVACLKLWAS 347
           LRV+    L N S +  N +  HIH   S H+A LK++ +
Sbjct: 191 LRVAMKTKLYNESIYAMNEM--HIHRGLSPHMAVLKVFVN 228


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 289 HNKFLQKQL-TFIN-IFKCDTRKYNGLHKAYIT*P 191
           HN  L   L  F+N   K  T KYNGL   Y+T P
Sbjct: 600 HNSELLANLGNFVNRTLKFTTAKYNGLVPHYLTDP 634


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 405 DRKKCYAVKLAEQKRQWKQNWPIVSNTRRA 316
           D + CY+V L+  K +   NW  +   RR+
Sbjct: 625 DFEMCYSVLLSRLKERKIHNWSSIGRLRRS 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,131
Number of Sequences: 5004
Number of extensions: 50963
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)