Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20903
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0242 + 2534316-2535482                                           31   0.88 
11_01_0602 - 4788483-4788659,4789106-4789174,4789265-4789742,479...    28   6.2  
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508...    27   8.2  

>10_01_0242 + 2534316-2535482
          Length = 388

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 346 LAHSFKHATCTLRLG*MCDHNKFLQKQLTFINIFK 242
           L H  KH TC LR   +C H ++L +   FI  F+
Sbjct: 14  LLHLPKHPTCLLRASLVCKHWRYLIRDNKFIKRFR 48


>11_01_0602 -
           4788483-4788659,4789106-4789174,4789265-4789742,
           4791348-4791892
          Length = 422

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 158 IKTELQTGTMHVYYIS*QLSQRSPVLIVNYACIMQYYSTQRCSY 27
           +K  L+TG +    I+ +  +  PVL+      M YY +Q C +
Sbjct: 318 VKDMLETGYLEGVEIAYKKKRDGPVLLTGQIHKMAYYCSQNCEF 361


>05_01_0573 -
           5083030-5083151,5084639-5084738,5084790-5084829,
           5085122-5085567
          Length = 235

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 450 PTHA*SHPLGLPVNKDRKKCYAVKLAEQKRQWKQNWPIVSNTRRAHCGLGECVITINSY 274
           P+ +  + LG+P+   R  C A     ++R W+   P  +N  R    LG  ++    Y
Sbjct: 105 PSSSSQYLLGIPIAASR--CMATNEEARRRWWRGRQPAGANRSRIRRALGASLLARRVY 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,112
Number of Sequences: 37544
Number of extensions: 288878
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)