Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20903
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.7  
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)                       28   6.3  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            27   8.4  
SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)                  27   8.4  
SB_57641| Best HMM Match : FYVE (HMM E-Value=2.9)                      27   8.4  
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)                27   8.4  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      27   8.4  

>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = +2

Query: 8    TPYYHRHNCSAVWSNT------ALYTHSSQLRRDFFGIIVTIYNI-HALCPFEVQF*LQT 166
            TP Y++++C  VWSN        LY   SQ       I VT   +   LC  + +F  + 
Sbjct: 778  TPSYNQYSCDEVWSNEHLRQGYTLYLFISQYLLPLIIISVTYSKMAWVLCNRDKEFEGKK 837

Query: 167  EYSNNESSR-SRYIRLM*SIILT 232
             +  N   R  ++IRL+  +++T
Sbjct: 838  SHEKNAKVRHMKFIRLLIVLVVT 860


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 442  CLKSPVRSSCKQRPKKMLCSKVSGTKTAMETKLAHSFKHATCTLRLG 302
            C  S  R++C QR K  +CS+V     A++T +  +    T T  LG
Sbjct: 1466 CCFSGCRNTCVQREKDDICSRVIDLAIAVDTSM--NMDRCTWTRNLG 1510


>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
          Length = 249

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 108 LRYIIYMHCARLKFSFNCKPNIRIMRVLGHVIYALCNP 221
           L+Y   +H  ++KF    KP+ RI R + HV+++   P
Sbjct: 193 LQYTNIVHRMKMKFQGR-KPSRRIKRYVSHVVHSCIKP 229


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 381 KLAEQKRQWKQNWPIVSNTRRAHCGLGE 298
           KLAE+KR+WK++    S++++A    GE
Sbjct: 45  KLAEEKRKWKEDID-TSDSKKARLATGE 71


>SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)
          Length = 120

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 402 RKKCYAVKLAEQKRQWKQN 346
           +K  Y V+L E++++WKQN
Sbjct: 17  KKNAYLVELIERQKKWKQN 35


>SB_57641| Best HMM Match : FYVE (HMM E-Value=2.9)
          Length = 97

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 336 VSNTRRAHCGLGECVITINSYKNSL--HLSIYSNAIR 232
           VSN  R    LGEC+ TI+     L  HL   SNA R
Sbjct: 57  VSNASRPFTILGECLTTIHDLCRMLDDHLRFVSNASR 93


>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
          Length = 533

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 150 SFNCKPNIRIMRVLG-HVIYALCNPLYLRVSHLNILINVSCFCKNLL*SHIHPSRSVHV 323
           S+ C P+   M V   HV+ ++C  ++  V   +I  +  C    +L S   P R VHV
Sbjct: 453 SWRCFPHRVFMSVFSYHVLMSMCPQIHAHVDVFHITCSCLCVSHRVLISMYSPWR-VHV 510


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
 Frame = +2

Query: 5   LTPYYHRHNC-----------SAVWSNTALYTHSSQLR 85
           LTP Y  H+C           S +WSN  LYT+ S LR
Sbjct: 315 LTPSYTNHSCLWSNAVLYTYHSCLWSNAVLYTNHSCLR 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,291
Number of Sequences: 59808
Number of extensions: 385290
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)