Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20903
         (579 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   3.1  
AY843205-1|AAX14774.1|  478|Anopheles gambiae odorant receptor O...    24   4.1  
AY363725-1|AAR14938.1|  478|Anopheles gambiae seven transmembran...    24   4.1  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 432 HPLGL-PVNKDRKKCYAVKL--AEQKRQWKQNWPIVSNTRRAHCGLGECVITINSYKNSL 262
           HP    P     K C   +L  + +  QW + W I      A+   GEC   +N++ N+ 
Sbjct: 322 HPFQYHPTYDQHKSCRIQQLYVSFKDLQWHE-WIIAPEGYGAYYCSGECNFPLNAHMNAT 380

Query: 261 HLSIYSNAIRVS 226
           + +I    + ++
Sbjct: 381 NHAIVQTLVHLN 392


>AY843205-1|AAX14774.1|  478|Anopheles gambiae odorant receptor
           Or83b protein.
          Length = 478

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 165 PNIRIMRVLGHVIYA-LCNPLYLR 233
           PNIR+M+  GH ++  +  P+ +R
Sbjct: 17  PNIRLMQASGHFLFRYVTGPILIR 40


>AY363725-1|AAR14938.1|  478|Anopheles gambiae seven transmembrane G
           protein-coupledreceptor protein.
          Length = 478

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 165 PNIRIMRVLGHVIYA-LCNPLYLR 233
           PNIR+M+  GH ++  +  P+ +R
Sbjct: 17  PNIRLMQASGHFLFRYVTGPILIR 40


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,815
Number of Sequences: 2352
Number of extensions: 14069
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)