Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20903
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 5    LTPYYHRHNCSAVWSNTALY 64
            +TP+ HRH  S + SN  +Y
Sbjct: 983  VTPFEHRHFISGIDSNLHVY 1002


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 270 FCKNLL*SHIHPSRSVHVAC 329
           F KNL  + I   R +HV+C
Sbjct: 102 FMKNLELTQIRRDRGLHVSC 121


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 193 PRTLIIRIFGLQLKLNFKRAQCMYIIYRNNYPK 95
           PRTL + IF  +L+L  K         +NN  K
Sbjct: 495 PRTLTLGIFAEKLRLETKELFSSQQKTKNNLMK 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,038
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)