Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20902
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    71   8e-14
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    28   0.98 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   1.7  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   1.7  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   4.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   5.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.9  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   9.1  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   9.1  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   9.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.1  

>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
 Frame = +3

Query: 276 GSLAESIADGV-RIPYEDIPNFPISTVEGHHGQLVFGHI--EGVSVVAMQGRFHYYEGYP 446
           G+LA  ++  V  +PYEDIP+F +S V GH  +L F  +  + V  + + GR+H YEGYP
Sbjct: 52  GTLASGLSAPVYEVPYEDIPHFHVSHVPGHASKLYFAFLGEKRVPTMILAGRYHSYEGYP 111

Query: 447 LWKCCLPXXVMKLXGVKILIATNS 518
           +     P  +MK+ GV++++ TN+
Sbjct: 112 IEATTFPVRLMKVMGVEVMVVTNA 135



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 172 YETLVETANFLLSRISE---KPNIGIICGSG 255
           Y   +E   +++ ++ E   KP + IICGSG
Sbjct: 20  YIKALEAREYIIEQVPEELSKPKVAIICGSG 50


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 151 NEKTGYSYETLVETANFLLSRISEKP-NIGIIC 246
           NE+ G+S E LV T  +L  ++ E P +I  IC
Sbjct: 68  NEEKGFSLEALVATCIYLSCKVEECPVHIRTIC 100


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -3

Query: 366 HDDPPLCLWESLEYLR-MVFLPRLLYFLLVN-PLS 268
           H D  +C+  S+ +L  +V +PR LYFLL + PL+
Sbjct: 188 HKDAIICMMLSVIWLFCLVAIPRFLYFLLASVPLT 222


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -3

Query: 408 QRRTLLLCDRKQADHDDPPLCLWESLEYLRMVFLPRLLYFLLVNPLSNTNPS 253
           + + L+   RK+  ++D  L LW S   +  +    +  + L+NP + T P+
Sbjct: 27  REQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPTLTGPT 78


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 152 FPLQSDPISGRTFCVTKQFFSTISFAFIGAITTLSYRKIKAKNK*NDVQ 6
           F    D    + FC+ +QF   I    I  + TL    I +KN+  ++Q
Sbjct: 281 FGPNGDEYITQLFCLVRQFDPCIRLLSISCLVTLYKAGILSKNQTKEIQ 329


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 86   SWRKIVWSR-RRSCRKSDLIVMEMKKLDILMKH*W 187
            SW K+V +  ++SC K    + E  +  IL KH W
Sbjct: 2220 SWLKLVLADPKKSCEKEFSKIWESMRYLILFKHAW 2254


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -1

Query: 443 ISFVVMKTALHSNDGHSFYVTENKLTMMTLHCAYGK----VWNIF---VWYSYPVCYTFC 285
           I FV+   +L   + + F  ++   T MTL    G+    + N+F    W+  PVCY  C
Sbjct: 159 IGFVLFVASLKKGN-YKFQFSQFCWTHMTLLLVVGQSHFMINNLFEGLFWFFVPVCYVVC 217


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 278 TLFPIRTHPEPQMMPMFGFSDILDSKKFAVST-NVS*EYPVF 156
           ++F     P+   +   GF D +   +FAVST  VS  +P F
Sbjct: 221 SIFNFNMDPDALRLTSLGFFDFVQYLQFAVSTAQVSVMFPKF 262


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 339 PISTVEGHHGQLVFGHIEGVSVVAMQGRFHY---YEGYPLWKCCL 464
           P++ +EG+  Q     I+  S +A   +  Y    + YP+WK C+
Sbjct: 204 PLNGIEGYESQKQ--RIKPWSGIASMIQIDYEKRLQNYPIWKACI 246


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 124 PEIGSDCNGNEKTGYSYETLVETANFLLSRISEKPNIGIICGSG 255
           PE  +    NE   Y Y T +  A F++  +   PN   I  +G
Sbjct: 116 PEYETANTNNES--YIYNTQISAAQFIIDMVKANPNEITIVAAG 157


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 371 LTMMTLHCAYGKVWNIFVWYSYPVCY 294
           L    L C +    NI +WY+  VCY
Sbjct: 451 LEYFVLICNHEPAQNIGLWYNMGVCY 476


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 306 VRIPYEDIPNFPISTVEGHHGQLVF 380
           VR P EDIP F I  V   H   VF
Sbjct: 473 VRFPSEDIPKF-IEYVRNSHDNKVF 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,777
Number of Sequences: 5004
Number of extensions: 49582
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)