Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20902
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    29   2.3  
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082...    27   7.0  
04_04_0898 + 29220860-29221462,29221547-29222545                       27   7.0  

>06_02_0064 +
           11062798-11063568,11064212-11064261,11064354-11064510,
           11064598-11064816,11065301-11065429,11066502-11068031,
           11068654-11069013,11069086-11069205,11069727-11069897,
           11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 261 SYWKEGSLAESIADGVRIPYEDIPNFPISTVEGHHGQLVF 380
           S W    LA +  DG+   ++D  + P+S ++ H GQ V+
Sbjct: 384 SQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDGQAVY 423


>05_07_0008 -
           27007919-27007944,27008070-27008127,27008218-27008292,
           27008417-27008470,27008574-27008840,27008913-27009193,
           27009268-27009409,27009491-27009601,27009975-27010013,
           27010173-27010310,27010415-27010552,27011438-27011562,
           27011702-27011723
          Length = 491

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 EIGSDCNGNEKTGYSYETLVETANFLLSRISEKPNIGIIC 246
           +I  +C+  +K G SYE  +ET   + + +  K N   +C
Sbjct: 154 KIFKECHSYDKDGGSYELSLETCKCIGAYVKSKKNQNQLC 193


>04_04_0898 + 29220860-29221462,29221547-29222545
          Length = 533

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 127 EIGSDCNGNEKTGYSYETLVETANFLLSRISEK 225
           E+GS CNG   +G   E LV     +L    EK
Sbjct: 267 EVGSGCNGGGNSGGGEEVLVRLLQVVLEGKDEK 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,267
Number of Sequences: 37544
Number of extensions: 309703
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)