Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20902
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)                  29   1.8  
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_14795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             27   7.2  
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
          Length = 1080

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 387 CDRKQADHDDPPLCLWESLEYLRMVFLPRLLYFLLVNPLSNT 262
           C+R   +HDD P C+ +S E+      P L Y  L   LS T
Sbjct: 394 CERDSTEHDDSPRCVRDSKEHEADTSSP-LPYLSLREKLSTT 434


>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 330  PNFPISTVEGHHGQLVFGHIEGVSVVAMQGRFHYYEGYPLW 452
            PN  IS VE  +G++VF +  G  +V ++  F+YY    +W
Sbjct: 1321 PNEFIS-VELVNGKIVFKYDTGAGLVRVESNFNYYSAGGVW 1360


>SB_14795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 YSYETLVETANFLLSRISEKPNIGIICGSGWVRIGKRV 279
           + Y+ +      + ++ S +P IG+ICGSG   +G  V
Sbjct: 6   HKYDEVDAICQNIRNQTSYQPTIGVICGSGLSSLGDLV 43



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 279 SLAESIADGVRIPYEDIPNFPIST 350
           SL + + +   IPYE IP FP ST
Sbjct: 38  SLGDLVTEKTVIPYEKIPQFPRST 61


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 64  APINANDIVEK-NCLVTQKVLPEIGSDCNGNEKTGYSYETLVETANFLLSRI 216
           A INAN+I +   CL T       G  C+G+E    S +TLV ++   ++RI
Sbjct: 519 ATINANNICDPPRCLGTSNGSAMAG--CHGDEGLSSSGDTLVPSSKECIARI 568


>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 82  DIVEKNCLVTQKVLPEIGSDCNGNEKTGYSYETLVETANFLLSRISEKPNIGIIC 246
           D +EK   +      E     + + K  +  E +VETA FL+    +   I I+C
Sbjct: 588 DCMEKTMFLINHTRKESTRKTSHSYKNDFEAEQIVETAKFLIQNGVKPEEITILC 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,716
Number of Sequences: 59808
Number of extensions: 369677
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)