Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20902
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 232 CSVSLIFSTARNLRSPL-MFHKNIQFF 155
           C V  IFST+++LR+P  MF  ++  F
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAIF 102


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 232 CSVSLIFSTARNLRSPL-MFHKNIQFF 155
           C V  IFST+++LR+P  MF  ++  F
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAIF 102


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 180 ISGDRKFLAVENIRETEHWHHLR 248
           I+GD K++   NI+    W   R
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPR 51


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 180 ISGDRKFLAVENIRETEHWHHLR 248
           I+GD K++   NI+    W   R
Sbjct: 150 ITGDEKWVVYNNIKRKRSWSRPR 172


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  TYKRERYRGEKLFGH 110
           TYK++RY   +L GH
Sbjct: 234 TYKKQRYPWVQLAGH 248


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  TYKRERYRGEKLFGH 110
           TYK++RY   +L GH
Sbjct: 149 TYKKQRYPWVQLAGH 163


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  TYKRERYRGEKLFGH 110
           TYK++RY   +L GH
Sbjct: 468 TYKKQRYPWVQLAGH 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,434
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)