Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20902
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi...    29   1.9  
At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate 1-p...    29   1.9  
At5g54320.1 68418.m06765 hypothetical protein contains Pfam prof...    29   2.5  
At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At2g02880.1 68415.m00238 mucin-related similar to putative mucin...    27   7.7  

>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
           PF05669 SOH1
          Length = 196

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 342 WESLEYLRMVFLPRLLYF--LLVNPLSNTNPSRAAN 241
           W+  EY++ +  P  LYF  LL NP   T  +  AN
Sbjct: 72  WQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPAN 107


>At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase,
           pyrophosphate-dependent) (Pyrophosphate-dependent
           6-phosphofructose-1-kinase) (PPI-PFK) {Ricinus communis}
          Length = 585

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 9   NIVLFIFRFNFSITKC----GNGTYKRERYRGEKLFGHAEGPAG 128
           N++  IF F   I  C    G   Y +E  RG  LFG   GPAG
Sbjct: 114 NVICGIFGFKNLICDCIFVVGLIDYLQEYARGSSLFGFRGGPAG 157


>At5g54320.1 68418.m06765 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 369

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 55  VVMAPINANDIVEKNCLVTQKVLPEIGSDCNGNEKTGYSYETLVETANFLLSRI--SEKP 228
           V    ++A+   +++C+V  K L    S C   +         +E   F LSR+  S+K 
Sbjct: 140 VTNVSLSASSPEDEDCVVAVKFLGPQLSFCRPAQSNSEWINIRIENPCFYLSRVMYSKKD 199

Query: 229 NIGIICGSGWVRIG 270
           N+  I GSG   IG
Sbjct: 200 NMFCIPGSGGHLIG 213


>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 49  LSVVMAPINANDIVEKNCLVTQKVLPEIGSDCNGNEKTGYSYETLVETANFLLSRISEKP 228
           +S+++       I+EK    ++K+LP    +      T   +E+ ++    L  ++  KP
Sbjct: 90  ISIILRREATKSIIEKK-KGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKP 148

Query: 229 NIGI 240
           N+GI
Sbjct: 149 NVGI 152


>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
           GI:18071389 [Oryza sativa]
          Length = 314

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 213 NIRETEHWHHLRLWMGSYWKEGSLAESIADGVRIPYEDIPNFPI 344
           N+  T+  +    W  + W+   L + + D +R P+E   NFP+
Sbjct: 33  NLMSTKSGNDEDKWNDA-WESAWLPDDLTDKIRAPWERDVNFPV 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,411
Number of Sequences: 28952
Number of extensions: 259582
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)