Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20899
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    29   0.50 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.7  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   6.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   6.2  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   6.2  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.2  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.2  

>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = +3

Query: 177 RANRQESKRFEKRNSQCYEK*QRRNRKQVKHINRLVMYDRARL 305
           RA+++E +R E R+ +   K + RN+K+++ I +L    +ARL
Sbjct: 184 RASKREMERLE-RDQELRNKIEERNKKELETIEKLRELAKARL 225


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 469 KNQGHQIEIYDSSVNYHTLS 528
           K+QGH +    S +NYHTLS
Sbjct: 183 KHQGHSLLQTVSGLNYHTLS 202


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 302 SGSIIHYQAVYVFYLFAISPLLFFITLRVSFFKSFGFL 189
           S S +    +Y  Y   IS L+FF+   V FF +F F+
Sbjct: 582 SSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFV 619


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -1

Query: 341 GAFSIVLCAAFY*SGSIIHYQAVYVFYLFAISPLL-----FFITLRVSFFKS 201
           G+F +V+C AFY          +  F L AI+ LL     F  TL V F KS
Sbjct: 535 GSFILVMCQAFYVEELARQVIGIIFFALNAITMLLLILGIFIRTLIVLFRKS 586


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 269 VFYLFAISPLLFFITL---RVSFFKSFGFLPVCSAITLNKHILS 147
           VF  F   PLL FITL   R +F K    LPV + I+    I+S
Sbjct: 7   VFVYFYFFPLLVFITLQYPRWTFNKWKALLPVSAYISFYFIIIS 50


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 148 DNMCLFNVIAEQTGKNPNDLKKETLN-VMKN 237
           DN CLF  +++  G +P +L++   N V+ N
Sbjct: 143 DNSCLFRALSKPLGFSPYELREIVANQVLSN 173


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +3

Query: 252 RKQVKHINRLVMYDRARLIEGGAQYNGKCPEQAKSFLRNSYGVKGFKNKNKGHAD 416
           R Q++ +N L  +     I  G   + + P+   +   NSY   G  N N+   D
Sbjct: 667 RPQLESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEFDGASNNNQRVGD 721


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 NRQESKRFEKRNSQCYEK*QRRNRKQVKHIN 275
           N++ ++  EK+NS+ + K   RN+ + K ++
Sbjct: 10  NKEHNRASEKKNSRTHNKKTNRNQSKEKPVS 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,760
Number of Sequences: 5004
Number of extensions: 48765
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)