Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20899
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    36   0.024
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039...    32   0.30 
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119     30   1.6  
02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591...    29   2.1  
01_06_0414 + 29182350-29183812,29184211-29184346                       29   3.6  
01_06_0639 + 30772804-30772904,30773386-30775675                       28   6.3  
04_04_1599 + 34700250-34700437,34700799-34700869,34701029-347010...    27   8.4  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -3

Query: 348 LARGIFHC---IVRRLLLIWLYHTLPGGLCVLLVCDFSFAIF-HNIESFFFQIVWILACL 181
           +A G F C   + +R   ++L   L  GL +LL   F+ +IF H+  SF F++ + L   
Sbjct: 129 IAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIF 188

Query: 180 LGYNI 166
           LGY +
Sbjct: 189 LGYMV 193


>09_04_0463 -
           17803120-17803233,17803647-17803758,17803866-17803927,
           17804171-17804269,17804370-17804474,17804560-17804639,
           17806445-17806517,17806611-17806700,17807215-17807277,
           17808104-17808155,17808504-17808604,17809139-17809238,
           17809683-17809746,17810127-17810184,17810549-17810635,
           17810736-17810870,17810950-17811054,17811247-17811351,
           17811427-17811663,17812287-17812380,17812863-17813020,
           17813289-17813363,17813448-17813512,17814206-17814260
          Length = 762

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 318 AQYNGKCPEQAKSFLRNSYGVKG-FKNKNKGHADIHIPFETKTIGMLNIISEESGTSNRD 494
           A++NGK  +  + F++   G+KG F  +  G AD++   E K    +N +    G +  D
Sbjct: 482 AEWNGKYRDDLRRFIKGDPGMKGVFATRVSGSADLYQVNERKPYHGVNFVIAHDGFTLCD 541

Query: 495 L 497
           L
Sbjct: 542 L 542


>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
          Length = 440

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 43  KSKPIQIQYHAPEDGSNVGHFTLKGQREPSRKGDSDNMC 159
           KS P +     P DG N G+F +KG  +    GD +  C
Sbjct: 11  KSHP-EAATQPPPDGRNSGYFVVKGPDDDGGGGDDETCC 48


>02_05_1050 -
           33757432-33757664,33757767-33758645,33758720-33759109,
           33759488-33759613,33760497-33760557
          Length = 562

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  AKKSKPIQIQYHAPEDGSNVGHFTLKGQREPSRKGDSDNMCLFNVIAE--QTGKNPNDLK 210
           AK+S+    Q  A ED   V H   K   E + KGD  +  +    ++  QTGK+P+D+ 
Sbjct: 173 AKRSRVASSQ--AAEDSPTV-HRGKKRNEESASKGDQLDGAVIPSPSKKLQTGKSPSDVL 229

Query: 211 KETLNVMKNSKGEIA 255
            +    ++N  G++A
Sbjct: 230 PKRKPTIRNKDGKLA 244


>01_06_0414 + 29182350-29183812,29184211-29184346
          Length = 532

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 315 RLLLIWLYHTLPGGLCVLL-VCDFSFA 238
           RL  +W   T+ G LCV+L + DFSFA
Sbjct: 327 RLWGLWTVQTIGGVLCVVLGIVDFSFA 353


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +3

Query: 243 RRNRKQVKHINRLVMYDRARLIEGGAQYNGKCPEQAKS--FLRNSY------GVKGFKNK 398
           RRN  Q +  NR   Y  AR+  G + YN + P  + +  +  NS       G  GF N+
Sbjct: 118 RRNPGQPEFPNRHEPYSSARVNNGASGYNDRQPYGSANAQYRSNSAQPSQTGGPYGFANR 177

Query: 399 NKGHADIHIPFE 434
           N+ +    + +E
Sbjct: 178 NEPYTSARVNYE 189


>04_04_1599 +
           34700250-34700437,34700799-34700869,34701029-34701093,
           34701193-34701273,34701328-34701408,34701632-34701651,
           34701795-34701867
          Length = 192

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 457 ILFLKNQGHQIEIYD-SSVNYHTLSEKRTVNLQLKCXTI 570
           ILFLK++GH I I   S  N   L   R   L L C T+
Sbjct: 69  ILFLKSKGHSIHILCLSQGNADGLGNIRKEELYLACVTL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,367
Number of Sequences: 37544
Number of extensions: 284407
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)