Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20899
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.23 
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            29   2.8  
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.6  
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)                   27   8.6  

>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 350 CLLGAFSIVLCAAFY*SGSIIHYQAVYVFYLFAISPLLFFITL 222
           CLLG FS+ LCA++Y     + +     F + AIS  +F  TL
Sbjct: 864 CLLGVFSLALCASWYRFFQSVAFVLALSFVVGAISGTVFANTL 906


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 252 RKQVKHINRLVMYDRARLIEGGAQYNGKCPEQAKSFLRNS 371
           RKQ   + R   + R + +E       +CPE A+SF++N+
Sbjct: 236 RKQTPKLARKTKFTRKQRLESDEDDVFECPENAESFVQNN 275


>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 112  KGQREPSRKGDSDNMCLFNVIAEQTGK------NPNDLKKETLNVMKNSK 243
            KG+R  SRK D+   C    + +  G       NPND  K+T    KN K
Sbjct: 1021 KGRRGTSRKADNTEKCSDEGVDDNGGSMGYNTTNPNDSSKKTKIKNKNVK 1070


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 91  NVGHFTLKGQREPSRKGDSDNMCLFNVIAEQTGKNPNDLKKETLNVMKNSKGEI 252
           N GH  L+ + + +   D  N  +      ++  NP ++   T  V++N++G++
Sbjct: 71  NTGHILLRTETDKAIPTDEKNRKVHCQFVARSTANPYEISPFTREVIENNRGQM 124


>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 402 KGHADIHIPFETKTIGML 455
           +GHA+IH+P +   IG+L
Sbjct: 638 RGHAEIHLPLQDHLIGLL 655


>SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)
          Length = 451

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = -1

Query: 347 LLGAFSIVLCAAFY*SGSIIHYQAVYVFYLFAI---SPLLFFITLRVSFFKS---FGFLP 186
           LLGA  +VL    Y     I       FYL+AI      LF     V   K+   F F  
Sbjct: 143 LLGAGLVVLVIGHYHCSFNITNTFYLHFYLYAIIGAGSFLFASLFHVYEPKTSMTFKFCK 202

Query: 185 VCSAITLNKHILS 147
            C  +T N HILS
Sbjct: 203 TCRFVTCNLHILS 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,611
Number of Sequences: 59808
Number of extensions: 346349
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)