Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20899
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    27   9.9  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    27   9.9  
U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL031630-9|CAA20988.1|  345|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    27   9.9  
AC087794-10|AAY86291.1|  131|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.11 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 234 FHNIESFFFQIVWILAC---LLGYNIE*THIIRVTFTGRFTLTFQCEMSNVR 88
           ++ I  +F+ I +I A    LL Y I  +H+ RVT    FT T Q +  +++
Sbjct: 271 YYFIVVWFYTIPFIAALFPILLVYRIRSSHVSRVTIIKTFTKTKQTQEEHIK 322


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 299 GSIIHYQAVYVFYLFAISPLLFFITLRVSFFKSFGFLPVCSAITLNKH 156
           GSI  + AV VF  +    +LF    +V+FF +   L  C      KH
Sbjct: 385 GSISDFHAVRVFCTYCAMAILFMFLFQVTFFNAVMSL-CCRREVSGKH 431


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 180  ANRQESKRFEKRNSQCYEK*QRRNRKQVKHINRLVMYDRARLIEGGAQYNGKCPEQAKSF 359
            A   E  R E+  SQ  E+ +++    VK +        A +++GGA+   K  ++ K+F
Sbjct: 1779 AKLAEDLRHEQEQSQQLERFKKQLESAVKDLQERADAAEAAVMKGGAKAIQKAEQRLKAF 1838


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 180  ANRQESKRFEKRNSQCYEK*QRRNRKQVKHINRLVMYDRARLIEGGAQYNGKCPEQAKSF 359
            A   E  R E+  SQ  E+ +++    VK +        A +++GGA+   K  ++ K+F
Sbjct: 1779 AKLAEDLRHEQEQSQQLERFKKQLESAVKDLQERADAAEAAVMKGGAKAIQKAEQRLKAF 1838


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
            protein.
          Length = 1947

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 180  ANRQESKRFEKRNSQCYEK*QRRNRKQVKHINRLVMYDRARLIEGGAQYNGKCPEQAKSF 359
            A   E  R E+  SQ  E+ +++    VK +        A +++GGA+   K  ++ K+F
Sbjct: 1779 AKLAEDLRHEQEQSQQLERFKKQLESAVKDLQERADAAEAAVMKGGAKAIQKAEQRLKAF 1838


>U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical
           protein F31A9.4 protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 266 FYLFAISPLLFFITLRVSFFKSFGFLPVCSAITLNKHILS 147
           FY  A + LLFF+ L++     F  L     I  NK+I S
Sbjct: 22  FYGTASAQLLFFVLLKICSLYRFQILDFFPTIQNNKNIFS 61


>AL031630-9|CAA20988.1|  345|Caenorhabditis elegans Hypothetical
           protein Y38H6C.10 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 529 PTRYDSLH-LSHKSLFDVPDSSEIIL 455
           P RYD  H +SH+  FD+ D +++++
Sbjct: 289 PHRYDQHHYVSHRQAFDMEDETKVLV 314


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 261 LVCDFSFAIFHNIESFFFQIVWILACLLGY-NIE*THIIRVTFTGRFTLTFQ 109
           + C   FA+ + +E     +VW +   LGY N     +I   F   F + F+
Sbjct: 496 IFCWLGFALVYGLEIKLNDVVWSIVFWLGYLNSALNPVIYTVFNREFRICFK 547


>AC087794-10|AAY86291.1|  131|Caenorhabditis elegans Hypothetical
           protein Y32G9A.12 protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 255 KQVKHINRLVMYDRARLIEG 314
           K VKH  R++ YD  RL++G
Sbjct: 45  KIVKHTERIIRYDGKRLVDG 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,525
Number of Sequences: 27780
Number of extensions: 271153
Number of successful extensions: 792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)