Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20899
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09020.1 68417.m01489 isoamylase, putative / starch debranchi...    31   0.43 
At5g51390.1 68418.m06371 expressed protein similar to unknown pr...    27   9.3  
At3g23120.1 68416.m02914 leucine-rich repeat family protein cont...    27   9.3  

>At4g09020.1 68417.m01489 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase isoform 3
           [Solanum tuberosum] GI:27728149, isoamylase [Oryza
           sativa] GI:3252794; contains Pfam profiles PF00128:
           Alpha amylase catalytic domain, PF02922: Isoamylase
           N-terminal domain
          Length = 764

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 318 AQYNGKCPEQAKSFLRNSYGVKG-FKNKNKGHADIHIPFETKTIGMLNIISEESGTSNRD 494
           A++NG   +  + F++   G+KG F  +  G +D++   + K    +N +    G + RD
Sbjct: 485 AEWNGMYRDDVRRFIKGDSGMKGSFATRVSGSSDLYQVNQRKPYHGVNFVIAHDGFTLRD 544

Query: 495 L 497
           L
Sbjct: 545 L 545


>At5g51390.1 68418.m06371 expressed protein similar to unknown
           protein (gb|AAB68039.1)
          Length = 113

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 280 RRFMCFTCLRFLLCYFS 230
           RRF CF C  FL  +FS
Sbjct: 93  RRFFCFECFDFLKLFFS 109


>At3g23120.1 68416.m02914 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5b GB:AAC78595
           [Lycopersicon esculentum] (Plant Cell 10, 1915-1926
           (1998);
          Length = 784

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 529 PTRYDSLHLSHKSLFDVPDSSEIILSIPIVLVSKG 425
           P+   S+ LSH S FD+  S E++    +V ++ G
Sbjct: 349 PSNLQSVDLSHNSFFDLGKSVEVVNGAKLVGLNLG 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,354,398
Number of Sequences: 28952
Number of extensions: 245234
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)