Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20898
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.7  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   3.5  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.1  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 260 SIQYQVLPKL*SF*CH*LQQHLFHYLNTLSLVLCCFSIVY 141
           ++ Y  +  L SF    LQQ L ++    S +L C S+++
Sbjct: 67  ALTYHAIFDLISFKDSDLQQKLRYFEEVFSSLLSCCSVIF 106


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 260 SIQYQVLPKL*SF*CH*LQQHLFHYLNTLSLVLCCFSIVY 141
           ++ Y  +  L SF    LQQ L ++    S +L C S+++
Sbjct: 67  ALTYHAIFDLISFKDSDLQQKLRYFEEVFSSLLSCCSVIF 106


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 390 WTKWVIYSFKFIISECYNLI 331
           W+ + I +  +I ++CYN +
Sbjct: 275 WSAFFIVNVLYICNQCYNTV 294


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 194 TNAVVTSDTKTTKVLVKPDT 253
           T +  T  T TTK   KP T
Sbjct: 164 TTSTTTRTTLTTKFTTKPST 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,096
Number of Sequences: 336
Number of extensions: 2947
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)