Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20898
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   1.6  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    27   2.1  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   3.7  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    26   3.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.0  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.0  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   8.7  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
 Frame = +1

Query: 256 MDIDRVEEQEMPLLKSELLHC-----QEYGNEII--AFTDN-EFKTINNPFG 387
           +DID   +  +P +  +++ C     QEY  E+I  AF+DN   +T++  FG
Sbjct: 182 LDIDTYRDHVLPAIIEQIIECRDSLAQEYLVEVICQAFSDNMHLQTLDTYFG 233


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 95  LIFEIGNNVSIGISIYKLLK--SNIEPKKVYLSNETNAVVTSDTKTTKVLVKPD 250
           L  ++GN+V IG+  + LLK   + +   VY   E  AV    +K      K +
Sbjct: 239 LKMDLGNDVRIGVEAFILLKRLESAKTNWVYAKGERFAVAVPQSKQVSFATKKE 292


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 27/84 (32%), Positives = 37/84 (44%)
 Frame = +2

Query: 32  KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
           KIE  T  +  + D+ +   + I+E+     + +     LK   E   V LSNE N  +T
Sbjct: 47  KIESSTLEVQKKKDQ-IRELERIYEMNPKSFLTLRRTPALKLLPETLSVELSNEVN--LT 103

Query: 212 SDTKTTKVLVKPDTVWILIGLKNK 283
           S T  T   VKP        LKNK
Sbjct: 104 SST--TSSCVKPSPYLTNCNLKNK 125


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 38  EDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKV 178
           ED+ KL L+ECD        I+ +G N  +     +L+K  +EP KV
Sbjct: 379 EDLEKLDLSECD--------IYMLGPNNYMRFVKQELVKLGVEPNKV 417


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 563 HTNSYSFCFNTCLVHCLETVVEPSIDFSLG---NKKEQFFKNHFSLQRKVSGLNPNS 402
           H +     F T +  CL   +EP + ++ G   +   Q+  +  +L + +S +N NS
Sbjct: 97  HFSDIPLIFGTLIFTCLSAALEPLMTWTTGKVFDALSQYATSQITLGKMISLINFNS 153


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 14  LPKSVWKIEDVTKLILNECDRHLATAQ-LIFE----IGNN 118
           L K  W+IE+  K  +N C  H  T +  IF+    +GNN
Sbjct: 210 LTKISWRIEEQIKAQINGCSTHTGTKKPYIFKETRLLGNN 249


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 569 TNHTNSYSFCFNTCLVHCLE 510
           + H +S+S  + TC++H LE
Sbjct: 272 SKHVDSFSDVYPTCIIHILE 291


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = +1

Query: 307 LLHCQEYGNEIIAFTDNEFKTINNPFGPAKLKLLGFKPETFLCKEKWFLKNCSFLFPNEK 486
           L+H   +  E +    ++     N F P++L+LLG    T + + +            EK
Sbjct: 144 LMHESVFSPEEVKLIMDQLNIPINNFTPSQLQLLGITNSTIVGESENGKDQNGDSSLKEK 203

Query: 487 SIEGSTTVSRQCTKHVLKQKL 549
             +  TTV++    + L+  L
Sbjct: 204 QPDVETTVTKSANLNALRSSL 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,638
Number of Sequences: 5004
Number of extensions: 47182
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)