Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20898
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0609 + 4517467-4517529,4517627-4517701,4517914-4518030,451...    40   0.001
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537...    32   0.31 
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    29   2.9  
12_02_0154 + 14494319-14495857                                         29   3.8  
11_01_0710 - 5830475-5830595,5831498-5834124                           28   5.0  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     28   6.7  
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126...    27   8.8  

>07_01_0609 +
           4517467-4517529,4517627-4517701,4517914-4518030,
           4518533-4518647,4519328-4519433,4519684-4519801,
           4519905-4519972,4520697-4520830,4520932-4520975,
           4521100-4521176,4521415-4521562,4522155-4522216,
           4522373-4522472
          Length = 408

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +1

Query: 319 QEYGNEIIAFTDNEFKTINNPFGPAKLKLLGFKPETFLCKEKWFLKNCSFLFPNEKSIEG 498
           Q Y ++I+ F+  E   +        L+LLGFKP  +L K+   L+  +F++P+++ I G
Sbjct: 302 QVYNDKIVKFSTRELSDVKR-VSSHHLRLLGFKPLDYL-KDYHNLRPSTFIYPSDEQIFG 359

Query: 499 STTV 510
           ST V
Sbjct: 360 STRV 363


>03_05_1137 +
           30652967-30653183,30653281-30653485,30653696-30653786,
           30653904-30654046,30654186-30654429,30654536-30654640,
           30654985-30655167,30655255-30655459,30655552-30656036
          Length = 625

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 110 GNNVSIGISIYKLLKSNIEPKK--VYLSNETNAVVTSDTKTTKVLV 241
           GNN++ G +I   +K+ ++P    VY  N  ++VVT D     ++V
Sbjct: 459 GNNITAGTTILSAIKATVDPSTTVVYSENPDSSVVTGDKYDYAIVV 504


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 412  FKPETFLCKEKWFLKNCSFLFPNEKSIEGSTTV 510
            F   T  C E W  + C  L PN  S++  T +
Sbjct: 1080 FSASTLSCNEIWKARECLNLLPNSISVQAETDI 1112


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = +1

Query: 292 LLKSELLHCQEYGNEIIAFTDNEFKTINNPFGPAKLKLLGFKPETFLCKEKWF 450
           LLKS  L C + G++II  T N+  T      P KLK L        C E WF
Sbjct: 300 LLKS--LSCGKQGSKIIVTTSNKHVTTIGTVQPIKLKFLP-------CPEYWF 343


>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +2

Query: 8   NSLPKSVWKIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLS 187
           ++LP+S+ +IE +  L L+ C R     +   ++   V + +S    +K   E    Y+ 
Sbjct: 135 SALPESIGEIEGLMHLDLSGCSRLKELPKSFGKLRRLVHLNLSNCSRVKDVSE----YIC 190

Query: 188 NETNAVVTSDTKTTKVLVKPDTVWILIGLKNKKCLYLSLS-CFTVKNM 328
             TN    + +   K+   P T+  L  LK     YL+LS CF +K +
Sbjct: 191 GLTNLEYLNLSVCRKIGFLPRTLGSLTELK-----YLNLSGCFGIKEL 233


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 527 LVHCLETVVEPSIDFSLGNKKEQFFKNHFS 438
           +V C+ET +  ++D++LG      F  HF+
Sbjct: 229 MVSCMETEILAALDYNLGGPTAYTFVEHFT 258


>04_01_0122 +
           1267048-1267149,1267764-1267855,1268137-1268234,
           1268333-1268488,1268736-1269355,1269480-1269547,
           1269848-1270099,1270390-1270525,1271054-1271246,
           1271386-1271939
          Length = 756

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 515 LETVVEPSIDFSLGNKKEQFFKNHFSLQRKVSG 417
           +E  VEPS      +KK+Q FK  F   RKV G
Sbjct: 689 IEMAVEPSELVFSKDKKDQSFKVTFKATRKVQG 721


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,094,149
Number of Sequences: 37544
Number of extensions: 229587
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)