Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20898
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.045
SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)                   31   0.97 
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   27   9.0  

>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +1

Query: 319 QEYGNEIIAFTDNEFKTINNPFGPAKLKLLGFKP----ETFLCKEKWFLKNCSFLFPNEK 486
           +EYG  + A        +N+ F     K L FKP    + F  + +   K+C F    E 
Sbjct: 123 EEYGKAVTALNGYFVPQVNSAFARQAFKSLSFKPNETTQQFATRLRKAAKDCEFGADVEN 182

Query: 487 SIEGSTTVSRQCTKHVLKQKL 549
            I    TV  +CT   +K+KL
Sbjct: 183 QIR--DTVLEKCTSTYIKRKL 201


>SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)
          Length = 1147

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +2

Query: 38   EDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVTSD 217
            ED+   I+N C  + +  +++   G +V + I++ + +K ++  K + LS+   AV  S 
Sbjct: 884  EDMLHTIINSCRLNNSVCEVLEITGISVQLMITVVRAMKKDLSIKGLRLSSSDTAVDASV 943

Query: 218  TKTTKVLV 241
                 V +
Sbjct: 944  ASAAAVAI 951


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = +2

Query: 134 SIYKLLKSNIEPKKVYLSNETNAVVTSDTKTTKVLVKPDTVWILIGLKNKKCLYLS 301
           +I++  + +I P     +   N ++   T+ T++  + + +WI I + N+K LYL+
Sbjct: 273 AIFRKDRQDINPGGGVFNAVYNTIIA--TRQTQLDCQAEAIWIKIEIANQKPLYLA 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,274
Number of Sequences: 59808
Number of extensions: 290458
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)